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Biology subjects

Siddique, R.

Publications and source records attributed to Siddique, R..

2 recordsLinked to original sources

DNA remodeling couples target recognition to directional transposition in a Tn7-like CAST

CRISPR-associated transposons (CASTs) couple target recognition to the insertion of large DNA cargoes, but how distinct targeting pathways are converted into productive and directional integration remains poorly understood1. Here we define the assembly pathway of a type I-B1 CAST from Anabaena variabilis, a system closely related to prototypical Tn7 that retains TnsD-mediated glmS recognition while incorporating CRISPR-based RNA-guided targeting2. Cryo-electron microscopy structures across multiple intermediates define a structural trajectory from two-step TnsD-mediated target recognition and stepwise assembly of the AAA+ ATPase TnsC to recruitment and activation of the split TnsA/TnsB transposase module. This trajectory culminates in an asymmetric strand-transfer complex that provides a structural basis for insertion orientation and supports a role for ATP hydrolysis in productive transpososome assembly. In parallel, RNA-guided targeting structures refine the functional PAM to ATG, define TniQ recruitment by Cascade, and show how CRISPR-based recognition converges on the shared TnsABC machinery. Together, these findings establish DNA remodeling and minor-groove positioning of TnsC as a common structural signal that converts protein- and RNA-guided target recognition into directional DNA insertion.

biochemistry↗

LRRC15 suppresses SARS-CoV-2 infection and controls collagen production

Although ACE2 is the primary receptor for SARS-CoV-2 infection, a systematic assessment of host factors that regulate binding to SARS-CoV-2 spike protein has not been described. Here we use whole genome CRISPR activation to identify host factors controlling cellular interactions with SARS-CoV-2. Our top hit was a TLR-related cell surface receptor called leucine-rich repeat-containing protein 15 (LRRC15). LRRC15 expression was sufficient to promote SARS-CoV-2 Spike binding where they form a cell surface complex. LRRC15 mRNA is expressed in human collagen-producing lung myofibroblasts and LRRC15 protein is induced in severe COVID-19 infection where it can be found lining the airways. Mechanistically, LRRC15 does not itself support SARS-CoV-2 infection, but fibroblasts expressing LRRC15 can suppress both pseudotyped and authentic SARS-CoV-2 infection in trans. Moreover, LRRC15 expression in fibroblasts suppresses collagen production and promotes expression of IFIT, OAS, and MX-family antiviral factors. Overall, LRRC15 is a novel SARS-CoV-2 spike-binding receptor that can help control viral load and regulate antiviral and antifibrotic transcriptional programs in the context of COVID-19 infection.

cell biology↗