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Shukurov, A.

Publications and source records attributed to Shukurov, A..

2 recordsLinked to original sources

Unlocking precision: How corneal cell area analysis revolutionises post-transplant stem cell monitoring

The corneal epithelium is maintained by limbal stem cells (LSCs). Dysfunction of the LSCs, resulting from chemical and thermal burns, contact lens-related disease, congenial disorders, among other conditions, leads to limbal stem cell deficiency (LSCD), a sight-threatening condition. An effective treatment of LSCD, with 76% of patients reporting regained sight up to 24 months after the operation, consists of transplanting ex-vivo cultured LSCs from the patients other healthy eye (i.e. autologous) or donor (i.e. allogeneic) to the affected eye. The post-operative assessment of corneal recovery is crucial but relies on ponderous and generally subjective visual inspection of a large number of microscopic images of the corneal epithelial cells, relying on the personal experience of the practitioner to interpret imprecise, qualitative diagnostic criteria. From a unique library of 100,000 cornea cell images from 34 patients, we have randomly selected 10 individuals (3,668 images) to demonstrate that the frequency distribution of the epithelial cell areas is a sensitive diagnostic tool of the corneal epithelium status. After a successful operation the distribution of cell areas is rather flat, reflecting an anomalously wide range of cell areas. As the cornea recovers, the frequency distribution becomes narrower with high statistical confidence and eventually approaches that of the healthy cornea. The corneal epithelial cell shape is independent of the cornea status despite a widespread expectation that healthy cells have a hexagonal shape. We also show that the corneal epithelial cell area distribution and its variation with the depth within the cornea are specific to each patient. Significance StatementChemical and thermal cornea burns, contact-lens damage and hereditary factors, among other conditions, cause limbal stem cell deficiency (LSCD), a widespread sight-threatening condition. An efficient LSCD treatment involves a stem cell transplant from the patients other healthy eye, in unilateral cases, or a donor, in bilateral cases. Traditional post-operative cornea monitoring is laborious and often subjective as it relies on visual inspection of microscopy corneal epithelial images. We show that the distribution of epithelial cell areas is a sensitive LSCD diagnostic, evolving systematically to a healthy form after a successful treatment. We have developed computer algorithms to implement this quantitative, sensitive and precise approach which can radically improve the quality of both cornea monitoring in disease and response to treatment.

biophysics↗

Spatio-temporal analyses of OCT4 expression and fate transitions in human embryonic stem cells

OCT4 is one of the transcription factors required to maintain an undifferentiated state in human embryonic stem cells (hESCs). Thus, it is crucial to understand how OCT4 transcription is regulated both at the single-cell and colony level. Here we analyse the changes of OCT4-mCherry intensity expression in hESCs in the presence and absence of the BMP4 morphogenetic protein. We show that OCT4 expression is dynamic, reaching a maximum response 10 h after BMP4 treatment. We obtain the stationary probability distributions that govern the hESCs transitions amongst the different cell states in the presence/absence of BMP4 and establish the times at which the hESCs, that lead to differentiated and pluripotent cells, cluster in the colony. Furthermore, by quantifying the similarities between the OCT4 expression amongst neighbouring hESCs, we show that hESCs express, on average, similar values in their local neighbourhood within the first two days of the experiment and before BMP4 treatment. These results are relevant for the development of mathematical and computational models of adherent hESC colonies.

biophysics↗