Shojaei, M. | Search bioRxiv

bioRxiv2026

A biosecurity baseline for transboundary management of marine biological invasions in the ROPME Sea Area

Marine and brackish-water ecosystems are increasingly degraded by cumulative human pressures, with biological invasions representing a major driver of biodiversity loss, ecosystem disruption, and socio-economic impacts. Effective management requires regionally harmonized and scientifically robust baselines capable of supporting coordinated transboundary decision-making. Here we present the first consolidated marine biosecurity baseline for the Regional Organization for the Protection of the Marine Environment (ROPME) Sea Area, a transboundary region characterized by extreme environmental conditions and increasing biosecurity pressure. A total of 192 species (123 extant and 69 horizon), including birds, fishes, tunicates, invertebrates, plants, and chromists, were systematically reviewed, taxonomically validated, and cross-checked against major databases and Member State inputs. Re-evaluation of a previous regional screening revealed substantial inconsistencies, with 24 species ({approx}18%) requiring status correction or exclusion. The resulting consolidated inventory comprised 130 validated retained species supplemented by 62 additional taxa. Extant species were classified according to biogeographic origin and impact status, whereas horizon species were evaluated based on introduction pathways, environmental suitability, and projected climate trends. Risk screening under current and projected climate conditions identified 39 extant species as very high risk, providing an operational basis for progression to full risk assessment and coordinated regional biosecurity management.

ecology↗

bioRxiv2021

High temporal resolution transcriptomic profiling delineates distinct patterns of interferon response following Covid-19 mRNA vaccination and SARS-CoV2 infection

Knowledge of the mechanisms underpinning the development of protective immunity conferred by mRNA vaccines is fragmentary. Here we investigated responses to COVID-19 mRNA vaccination via ultra-low-volume sampling and high-temporal-resolution transcriptome profiling (23 subjects across 22 timepoints, and with 117 COVID-19 patients used as comparators). There were marked differences in the timing and amplitude of the responses to the priming and booster doses. Notably, we identified two distinct interferon signatures. The first signature (A28/S1) was robustly induced both post-prime and post-boost and in both cases correlated with the subsequent development of antibody responses. In contrast, the second interferon signature (A28/S2) was robustly induced only post-boost, where it coincided with a transient inflammation peak. In COVID19 patients, a distinct phenotype dominated by A28/S2 was associated with longer duration of intensive care. In summary, high-temporal-resolution transcriptomic permitted the identification of post- vaccination phenotypes that are determinants of the course of COVID-19 disease.

immunology↗