Search bioRxiv⌕ Search

Biology subjects

Shephard, J. M.

Publications and source records attributed to Shephard, J. M..

2 recordsLinked to original sources

Estimating avian wingspan from wing length: an order-level regression approach

Wingspan is a key parameter in avian collision risk models but is rarely measured systematically, meaning for many species, collision risk remains largely unquantified due to a lack of morphological and flight data required to parameterise models. Folded wing length scales predictably with wingspan and is available for all extant bird species, yet no widely available method has been published for predicting wingspan from wing length; here we compiled a global wingspan dataset for 1,442 species across 25 orders and fitted order-level linear regression models predicting wingspan from wing length. Order-level models performed well, with 85% achieving R2 [≥] 0.95 (global model R2 0.96); cross-validation identified that model predictions generally fell within the intraspecific variation in wingspan, resulting in wingspan estimates for 9,194 species. Our models and accompanying wingspan data provide a transparent, reproducible, and validated method for generating species-level wingspan estimates from widely available wing length data, with direct applications to collision risk modelling, flight performance research, and macroecological analyses of avian morphology.

ecology↗

A comprehensive framework for handling location error in animal tracking data

Animal tracking data are being collected more frequently, in greater detail, and on smaller taxa than ever before. These data hold the promise to increase the relevance of animal movement for understanding ecological processes, but this potential will only be fully realized if their accompanying location error is properly addressed. Historically, coarsely-sampled movement data have proved invaluable for understanding large scale processes (e.g., home range, habitat selection, etc.), but modern fine-scale data promise to unlock far more ecological information. While GPS location error can often be ignored in coarsely sampled data, fine-scale data require more care, and tools to do this have not kept pace. Current approaches to dealing with location error largely fall into two categories--either discarding the least accurate location estimates prior to analysis or simultaneously fitting movement and error parameters in a hidden-state model. In some cases these approaches can provide a level of correction, but they have known limitations, and in some cases they can be worse than doing nothing. Here, we provide a general framework to account for location error in the analysis of triangulated and trilatcralizcd animal tracking data, which includes GPS, Argos Doppler-shift, triangulated VHF, trilatcralized acoustic and cellular location data. We apply our error-modelselection framework to 190 GPS, cellular, and acoustic devices representing 27 models from 14 manufacturers. Collectively, these devices were used to track a wide range of taxa comprising birds, fish, reptiles, and mammals of different sizes and with different behaviors, in urban, suburban, and wild settings. In almost half of the tested device models, error-model selection was necessary to obtain the best performing error model, and in almost a quarter of tested device models, the reported DOP values were actually misinformative. Then, using empirical tracking data from multiple species, we provide an overview of modern, error-informed movement analyses, including continuous-time path reconstruction, home-range distribution, home-range overlap, speed, and distance estimation. Adding to these techniques, we introduce new error-informed estimators for outlier detection and autocorrelation visualization. Because error-induced biases depend on many factors--sampling schedule, movement characteristics, tracking device, habitat, etc.--differential bias can easily confound biological inference and lead researchers to draw false conclusions. We demonstrate how error-informed analyses on calibrated tracking data can provide more accurate estimates are that are insensitive to location error, and allow researchers to use all of their data.

ecology↗