Biology subjects

Shen, K.

Publications and source records attributed to Shen, K..

5 recordsLinked to original sources

bioRxiv2018

Exploring the limits of network topology estimation using diffusion-based tractography and tracer studies in the macaque cortex

Reconstructing the anatomical pathways of the brain to study the human connectome has become an important endeavour for understanding brain function and dynamics. Reconstruction of the cortico-cortical connectivity matrix in vivo often relies on noninvasive diffusion-weighted imaging (DWI) techniques but the extent to which they can accurately represent the topological characteristics of structural connectomes remains unknown. We explored this question by constructing connectomes using DWI data collected from macaque monkeys in vivo and with data from published invasive tracer studies. We found the strength of fiber tracts was well estimated from DWI and topological properties like degree and modularity were captured by tractography-based connectomes. Rich-club/core-periphery type architecture could also be detected but the classification of hubs using betweenness centrality, participation coefficient and core-periphery identification techniques was inaccurate. Our findings indicate that certain aspects of cortical topology can be faithfully represented in noninvasively-obtained connectomes while other network analytic measures warrant cautionary interpretations.

neuroscience↗

bioRxiv2018

The functional reach of the hippocampal memory system to the oculomotor system.

Visual exploration is related to activity in the hippocampus (HC) and/or extended medial temporal lobe system (MTL), is influenced by stored memories, and is altered in amnesic cases. An extensive set of polysynaptic connections exists both within and between the HC and oculomotor systems such that investigating how HC responses ultimately influence neural activity in the oculomotor system, and the timing by which such neural modulation could occur is not trivial. We leveraged TheVirtualBrain, a software platform for large-scale network simulations, to model the functional dynamics that govern the interactions between the two systems in the macaque cortex. Evoked responses following the stimulation of the MTL and some, but not all, subfields of the HC resulted in observable responses in oculomotor regions, including the frontal eye fields (FEF), within the time of a gaze fixation. Modeled lesions to some MTL regions slowed the dissipation of HC signal to oculomotor regions, whereas HC lesions generally did not affect the rapid MTL activity propagation to oculomotor regions. These findings provide a framework for investigating how information represented by the HC/MTL may influence the oculomotor system during a fixation and predict how HC lesions may affect visual exploration. Author SummaryNo major account of oculomotor (eye movement) guidance considers the influence of the hippocampus (HC) and broader medial temporal lobe (MTL) system, yet it is clear that information is exchanged between the two systems. Prior experience influences current viewing, and cases of amnesia due to compromised HC/MTL function show specific alterations in viewing behaviour. By modeling large-scale network dynamics, we show that stimulation of subregions of the HC, and of the MTL, rapidly results in observable responses in oculomotor control regions, and that HC/MTL lesions alter signal propagation. These findings suggest that information from memory may readily guide visual exploration, and calls for a reconsideration of the neural circuitry involved in oculomotor guidance.

neuroscience↗

bioRxiv2018

Axonal transport and active zone proteins regulate dopaminergic synapse formation

At a typical synapse, the precise juxtaposition between the active zone and postsynaptic receptors ensures local and precise neurotransmitter release and detection. Dopamine neurons release neurotransmitter more diffusely using volume-transmission, where precise pre- and post-synaptic alignment is lacking. It is unknown whether Dopaminergic presynaptic terminals have typical active zone structures and how they develop. Here we show that presynaptic terminals of the C. elegans dopaminergic neuron PDE contain bona fide AZ proteins, including SYD-2/Liprin-, ELKS-1, UNC-10/RIM and CLA-1/Piccolo. During development, synaptic vesicles (SVs) and active zone proteins (AZs) coalesce within minutes behind the advancing growth cone. Precise regulation of UNC-104/Kinesin-3-mediated SV transport through kinesin autoinhibition is required to pause transported SVs at synapses. SYD-1 and SYD-2 recruit and cluster the transiting SVs, while ELKS-1 aggregates through a distinct mechanism.

neuroscience↗

bioRxiv2018

A conserved nuclear export complex coordinates transcripts for dopaminergic synaptogenesis and neuronal surviva

Synaptic vesicle and active zone proteins are required for synaptogenesis. The molecular mechanisms for coordinated synthesis of these proteins are not understood. Using forward genetic screens, we identified the conserved THO nuclear export Complex (THOC) as master regulator of presynapse development in C.elegans dopaminergic neurons. In THOC mutants, synaptic messenger RNAs are trapped in the nucleus, resulting in dramatic decrease of synaptic protein expression, near complete loss of synapses and compromised dopamine function. cAMP-responsive element binding protein (CREB) interacts with THOC to mark activity-dependent transcripts for efficient nuclear export. Deletion of the THOC subunit Thoc5 in mouse dopaminergic neurons causes severe defects in synapse maintenance and subsequent neuronal death in the Substantia Nigra compacta (SNc). These cellular defects lead to abrogated dopamine release, ataxia and animal death. Together, our results argue that nuclear export mechanisms can select specific mRNAs and be a rate-limiting step for synapse development and neuronal survival.\n\nHighlightsO_LIDopaminergic presynapses are severely impaired in thoc mutant worms and mice\nC_LIO_LITHOC specifically controls the nuclear export of synaptic transcripts\nC_LIO_LICREB recruits THOC onto activity-dependent synaptic transcripts for efficient export\nC_LIO_LIDopamine neurons in the SNc degenerate upon conditional knock-out of thoc5\nC_LI

neuroscience↗

bioRxiv2017

Clarinet (CLA-1), a novel active zone protein required for synaptic vesicle clustering and release

Active zone proteins cluster synaptic vesicles at presynaptic terminals and coordinate their release. In forward genetic screens we isolated a novel C. elegans active zone gene, clarinet (cla-1). cla-1 mutants exhibit defects in synaptic vesicle clustering, reduced spontaneous neurotransmitter release, increased synaptic depression and reduced synapse number. Ultrastructurally, cla-1 mutants have fewer synaptic vesicles adjacent to the dense projection and an increased number of docked vesicles. Cla-1 encodes 3 isoforms containing common C-terminal PDZ and C2 domains with homology to vertebrate active zone proteins Piccolo and RIM. The short isoform localizes exclusively to the active zone while a longer ~9000 amino acid isoform colocalizes with synaptic vesicles. Specific loss of CLA-1L results in synaptic vesicle clustering defects and increased synaptic depression, but not in reduced synapse number or mini frequency. Together our data indicate that specific isoforms of clarinet serve distinct functions, regulating synapse development, synaptic vesicle clustering and release.

neuroscience↗