Biology subjects

Shalev-Benami, M.

Publications and source records attributed to Shalev-Benami, M..

3 recordsLinked to original sources

bioRxiv2026

A variant rRNA serves as a translational repressor in Plasmodium falciparum

Ribosome composition can vary through differences in associated proteins, post-transcriptional and post-translational modifications. Such heterogeneity enables ribosomes to respond to environmental1 or pathological2,3 conditions, and modulate localized translation4. A long-standing observation has also been the differential expression of variant ribosomal RNA (rRNA) alleles across developmental5-7 or cellular states8-14. Yet how exchanging the catalytic ribosome core could regulate translational outcomes remains unknown. Here, we report the functional characterization of a genomically-encoded, divergent rRNA that serves as a dominant-negative repressor of translation during host-to-vector transmission in the human malaria parasite. This allele only encodes for large subunit rRNAs, lacks ITS2 splicing, yet retains conserved rRNA modification and folding patterns alongside vast expansion segments. The resulting large subunit engages mRNA at translation start sites but appears to elongate inefficiently, likely due to divergences in the peptidyl transferase center obstructing the exit tunnel. Through its precisely timed transcription immediately after transmission, this rRNA represses mRNAs that were highly translated in the human, facilitating the transition of the translational program for mosquito-stage development. Our data identify a repressive ribosome population whose antagonistic function is encoded by an independently evolved, variant rRNA allele, defining the conceptual foundation for an additional layer of inherent translational regulation.

molecular biology↗

bioRxiv2025

Multimodal characterization and optogenetic potential of the bistable Gi/o-coupled vertebrate ancient opsin from the flashlight fish Anomalops katoptron

Vertebrate ancient long opsin, or VAL opsin, is a light-sensitive protein that is found within and outside the visual system in vertebrates. In accordance with its wide distribution in the retina, brain, testis and skin, VAL is suggested to play a role in light-dependent physiological processes that are beyond vision. However, many aspects of the physiological properties and specific functions of VAL remain unclear. Here we identified and characterized the VAL opsin from the flashlight fish Anomalops katoptron (AkVAL) and show that this opsin is bistable and reversibly converts between active and inactive states by responding to cycles of green and blue/UV lights. We further show that AkVAL couples to the Gi/o pathway and controls the activity of GIRK channels in a bistable manner. In line with this, we demonstrated that AkVAL modulates neuronal activity in cerebellar Purkinje cells, where neuronal activity is reduced by UV/blue light and increased by green/red light illumination. In addition, upon the in vivo expression of AkVAL in neurons innervating body muscles of Caenorhabditis elegans the worms body movement can be bidirectionally controlled altering blue/UV and green illuminations. These data highlight the potential of AkVAL as an optogenetic tool to control cells in vitro and in vivo, in a bistable manner.

neuroscience↗

bioRxiv2024

Intracellular binding pocket revealed in the human bitter taste receptor TAS2R14

Bitter taste receptors (TAS2Rs), a subfamily of G-protein coupled receptors (GPCRs) expressed orally and extraorally, elicit signaling in response to a large set of ligands. Among the 25 functional TAS2Rs encoded in the human genome, TAS2R14 is the most promiscuous, and responds to hundreds of chemically diverse agonists. Here, we present the cryo-electron microscopy (cryo-EM) structure of the human TAS2R14 (hTAS2R14) in complex with its cognate signaling partner gustducin, and bound to flufenamic acid (FFA), a clinically approved nonsteroidal anti-inflammatory drug. The structure reveals an unusual binding mode for FFA, where two copies are bound at distinct binding pockets: one at the canonical GPCR site within the trans-membrane bundle, and the other in the intracellular facet, bridging the receptor with gustducin. Combined with site-directed mutagenesis and the design of a fluorescent FFA derivative for pocket-specific ligand binding BRET assays, our studies support a dual binding mode for FFA in TAS2R14. These results fill a gap in the understanding of bitter taste signaling and provide tools for guided design of TAS2R-targeted compounds.

biochemistry↗