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Biology subjects

Searfoss, A. M.

Publications and source records attributed to Searfoss, A. M..

2 recordsLinked to original sources

Detecting cultural evolution in a songbird species using community-science data and computational modeling

Song in oscine birds is learned across generations, and aspects of the song-learning process parallel genetic transmission: variation can be introduced into both cultural and genetic traits via copy-error, and both types of traits are subject to drift and selective pressure. Similarly to allele frequencies in population genetics, observing frequencies of birdsong features can improve our understanding of cultural transmission and evolution. Uniquely, community-science databases of birdsong provide rich spatiotemporal data with untapped potential to evaluate cultural evolution in songbirds. Here we use both community-science and field-study recordings of chipping sparrows to examine trends across nearly seven decades of song. We find that some syllable types tend to persist in the population for much longer than others. Persistent songs tend to contain more syllables of shorter duration than songs that were observed across fewer years. To draw inferences about the effects of learning biases on chipping sparrow syllables, we construct a spatially explicit agent-based model of song learning. By comparing our empirical analysis to simulated song distributions using three different song-learning strategies--neutral transmission, conformity bias, and directional selection--we suggest that chipping sparrows are unlikely to select tutors neutrally or with a conformity bias and that they learn their songs with a remarkably low copy-error rate.

evolutionary biology↗

Chipper: Open-source software for semi-automated segmentation and analysis of birdsong and other natural sounds

O_LIAudio recording devices have changed significantly over the last 50 years, making large datasets of recordings of natural sounds, such as birdsong, easier to obtain. This increase in digital recordings necessitates an increase in high-throughput methods of analysis for researchers. Specifically, there is a need in the community for open-source methods that are tailored to recordings of varying qualities and from multiple species collected in nature.\nC_LIO_LIWe developed Chipper, a Python-based software to semi-automate both the segmentation of acoustic signals and the subsequent analysis of their frequencies and durations. For avian recordings, we provide widgets to best determine appropriate thresholds for noise and syllable similarity, which aid in calculating note measurements and determining syntax. In addition, we generated a set of synthetic songs with various levels of background noise to test Chippers accuracy, repeatability, and reproducibility.\nC_LIO_LIChipper provides an effective way to quickly generate reproducible estimates of birdsong features. The cross-platform graphical user interface allows the user to adjust parameters and visualize the resulting spectrogram and signal segmentation, providing a simplified method for analyzing field recordings.\nC_LIO_LIChipper streamlines the processing of audio recordings with multiple user-friendly tools and is optimized for multiple species and varying recording qualities. Ultimately, Chipper supports the use of citizen-science data and increases the feasibility of large-scale multi-species birdsong studies.\nC_LI

animal behavior and cognition↗