Biology subjects

Seal, M. L.

Publications and source records attributed to Seal, M. L..

3 recordsLinked to original sources

bioRxiv2018

Desikan-Killiany-Tourville Atlas Compatible Version of M-CRIB Neonatal Parcellated Whole Brain Atlas: The M-CRIB 2.0

Our recently published M-CRIB atlas comprises 100 neonatal brain regions including 68 compatible with the widely-used Desikan-Killiany adult cortical atlas. A successor to the Desikan-Killiany atlas is the Desikan-Killiany-Tourville atlas, in which some regions with unclear boundaries were removed, and many existing boundaries were revised to conform to clearer landmarks in sulcal fundi. Our first aim here was to modify cortical M-CRIB regions to comply with the Desikan-Killiany-Tourville protocol, in order to offer: a) compatibility with this adult cortical atlas, b) greater labelling accuracy due to clearer landmarks, and c) optimisation of cortical regions for integration with surface-based infant parcellation pipelines. Secondly, we aimed to update subcortical regions in order to offer greater compatibility with subcortical segmentations produced in FreeSurfer. Data utilized were the T2-weighted MRI scans in our M-CRIB atlas, for ten healthy neonates (postmenstrual age at MRI 40-43 weeks, 4 female), and corresponding parcellated images. Edits were performed on the parcellated images in volume space using ITK-SNAP. Cortical updates included deletion of frontal and temporal poles and Banks STS, and modification of boundaries of many other regions. Changes to subcortical regions included the addition of ventral diencephalon, and deletion of subcortical matter labels. A detailed updated parcellation protocol was produced. The resulting whole-brain M-CRIB 2.0 atlas comprises 94 regions altogether. This atlas provides comparability with adult Desikan-Killiany-Tourville-labelled cortical data and FreeSurfer-labelled subcortical data, and is more readily adaptable for incorporation into surface-based neonatal parcellation pipelines. As such, it offers the ability to help facilitate a broad range of investigations into brain structure and function both at the neonatal time point and developmentally across the lifespan.

neuroscience↗

bioRxiv2018

Individual variation in longitudinal postnatal development of the primate brain

Quantifying individual variation in postnatal brain development can provide insight into cognitive diversity within a population and the aetiology of common neuropsychiatric and neurodevelopmental disorders that are associated with adverse conditions in early life. Non-invasive studies of the non-human primate can aid understanding of human brain development, facilitating longitudinal analysis during early postnatal development when comparative human populations are difficult to sample.\n\nIn this study, we perform analysis of a longitudinal MRI dataset of 32 macaques, each with up to five magnetic resonance imaging (MRI) scans acquired between 1 and 36 months of age. Using nonlinear mixed effects model we derive growth trajectories for whole brain, cortical and subcortical grey matter, cerebral white matter and cerebellar volume. We then test the association between individual variation in postnatal tissue volumes and birth weight.\n\nWe report nonlinear growth models for all tissue compartments, as well as significant variation in total intracranial volume between individuals. We also demonstrate that subcortical grey matter varies both in total volume and rate of change between individuals and is associated with differences in birth weight. This supports evidence that subcortical grey matter is specifically vulnerable to adverse conditions in utero and highlights the importance of longitudinal MRI analysis in developmental studies.

neuroscience↗

bioRxiv2017

Modelling Neuroanatomical Variation Due To Age And Sex During Childhood And Adolescence

Brain development is a dynamic process that follows a choreographed trajectory during childhood and adolescence with tissue-specific alterations that reflect complex and ongoing biological processes. Accurate identification and modelling of these anatomical processes in vivo with MRI may provide clinically useful imaging markers of individual variability in development. In this study, we build a model of age- and sex-related anatomical variation using multimodal imaging measures and manifold learning.\n\nUsing publicly-available data from two large, independent developmental cohorts (n=768 and 862), we apply a multimodal machine learning approach combining measures of tissue volume, cortical area and cortical thickness into a low-dimensional data representation.\n\nWe find that neuroanatomical variation due to age and sex can be captured by two orthogonal patterns of brain development and we use this model to predict age with a mean error of 1.6-2 years and sex with an accuracy of 80-84%.\n\nWe present a framework for modelling anatomical development during childhood using low-dimensional data representations. This model accurately predicts age and sex based on image-derived markers of cerebral morphology and generalises well to independent populations.

neuroscience↗