Search bioRxivSearch

Biology subjects

Scheer, I.

Publications and source records attributed to Scheer, I..

2 recordsLinked to original sources

Intra-voxel incoherent motion magnetic resonance imaging of the living human fetus: the technique and within-subject reproducibility

Our purpose was to test the within-subject repeatability of the perfusion fraction, diffusion coefficient and pseudo diffusion coefficient measurements in various fetal organs and in the placenta based on the intra-voxel incoherent motion imaging principle. In utero diffusion-weighted magnetic resonance imaging was performed on 1.5T and 3.0T clinical scanners with b-factors ranging from 0 to 900 s/mm2 in 16 steps and a tetrahedral diffusion-weighting encoding scheme. Data from 16 pregnant women (maternal age: 34 {+/-} 4.9 years, range: 24.6 -40.8) were included in this pilot study. For 15 cases, IVIM was repeated (maternal age: 33.7 {+/-} 5.2 years, range: 24.6 - 40.8). A bi-exponential model was fitted on the volume-averaged diffusion values and the perfusion fraction (f), diffusion coefficient (d) and pseudo diffusion coefficient (D*) were calculated. Within-subject repeatability was given as the test-retest variability of the IVIM parameters in the fetal frontal cortex, frontal white matter, cerebellum, lungs, kidneys, liver and in the placenta. An in-house developed image processing script was utilized to remove the image frames with excessive motion, and to perform motion correction by using non-linear freeform deformations. For the fetal lungs, liver and the placenta, within-subject variability ranged from 14.4% to 20.4% for f, 12.2% to 14.1% for d and 16.8% to 25.3% for D*. The diffusion coefficients of the investigated brain regions were moderately to highly reproducible (4.8% to 15.2%), however, f and D* showed inferior reproducibility compared to corresponding measures derived for the lungs, liver and placenta. The IVIM-based parameters of the fetal kidney were revealed to be highly variable across scans. Our results indicate that in utero intra-voxel incoherent motion magnetic resonance imaging potentially provides a novel method for examining microvascular perfusion and diffusion in the developing human fetus. The reproducible quantification of the perfusion and diffusion parameters depend greatly upon data quality, fetal and maternal movements, and image post processing to detect and remove corrupted data before calculating the IVIM model.

bioinformatics

In Utero Diffusion Tensor Imaging Of The Fetal Brain: A Reproducibility Study

Our purpose was to evaluate the within-subject reproducibility of in utero diffusion tensor imaging (DTI) metrics and the visibility of major white matter structures.\n\nImages for 30 fetuses (20-33. postmenstrual weeks, normal neurodevelopment: 6 cases, cerebral pathology: 24 cases) were acquired on 1.5T or 3.0T MRI. DTI with 15 diffusion-weighting directions was repeated three times for each case, TR/TE: 2200/63 ms, voxel size: 1*1 mm, slice thickness: 3-5 mm, b-factor: 700 s/mm2. Reproducibility was evaluated from structure detectability, variability of DTI measures using the coefficient of variation (CV), image correlation and structural similarity across repeated scans for six selected structures. The effect of age, scanner type, presence of pathology was determined using Wilcoxon rank sum test.\n\nWhite matter structures were detectable in the following percentage of fetuses in at least two of the three repeated scans: corpus callosum genu 76%, splenium 64%, internal capsule, posterior limb 60%, brainstem fibers 40% and temporooccipital association pathways 60%. The mean CV of DTI metrics ranged between 3% and 14.6% and we measured higher reproducibility in fetuses with normal brain development. Head motion was negatively correlated with reproducibility, this effect was partially ameliorated by motion-correction algorithm using image registration. Structures on 3.0 T had higher variability both with- and without motion correction.\n\nFetal DTI is reproducible for projection and commissural bundles during mid-gestation, however, in 16-30% of the cases, data were corrupted by artifacts, resulting in impaired detection of white matter structures. To achieve robust results for the quantitative analysis of diffusivity and anisotropy values, fetal-specific image processing is recommended and repeated DTI is needed to ensure the detectability of fiber pathways.\n\nAbbreviations

neuroscience