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Saragüeta, P.

Publications and source records attributed to Saragüeta, P..

3 recordsLinked to original sources

Chromatin landscape of endometrial tumor cells of tamoxifen users is associated with loss of progestin regulation

Tamoxifen is an effective steroid estrogen receptor modulator (SERM) widely used in breast cancer treatment. It acts through competitive inhibition of natural ligand estrogen (E2) at the estrogen receptor (ER), affecting ER interactions with other nuclear receptors, chromatin modulators, genomic structural proteins and co-regulators. Although tamoxifen inhibits the progression of breast cancer, it increases the risk of endometrial cancer, particularly in postmenopausal women. Progesterone receptor (PR) and ER cistromes of endometrial adenocarcinoma Ishikawa cells treated with ovarian hormones showed that ER binding sites are shared by PR at open sites of chromatin. This could explain, in part, progestin regulation of estrogen effects on ER/PR positive endometrial cancer cells. Here, we compared ER cistromes from endometrial tumors of tamoxifen users and non-users with ER and PR cistromes from Ishikawal model to evaluate how SERM exposure affects ER-binding signature. Non-user ER cistrome is closer to R5020-treated Ishikawa PR cistrome, while tamoxifen users ER cistrome is similar to estradiol-treated Ishikawa ER cistrome. The subset of ERbs of non-users regulates inflammatory signaling pathway genes. In contrast, the subset of ERbs of tamoxifen users modulates early estrogen response pathway genes, such as the oncogene NRIP1. This suggests that exposure to tamoxifen redirects ER binding toward genomic regions typically responsive to estrogen, whereas ER binding in non-users retains features associated with PR-occupied regulatory sites. These results provide an example of how SERM treatment may remodel endometrial tumor epigenetic landscape, highlighting context-dependent genomic responses that should be considered to prevent deregulation of endometrial tissue under tamoxifen exposure.

cancer biology↗

Quantitative analysis of cellular morphology during in vitro decidualization

Decidualization is a differentiation process involving shape reorganization from a fibroblast to an epithelioid-like appearance of endometrial stromal cells. Specificities of these cells impede the use of existing automated tools to follow morphological changes during differentiation; we therefore developed a simple but accurate methodology to quantify the phenotypical changes that occur in an in vitro decidualization system. The approach consists of the analysis of the circularity of the cells directly from light microscopy images. Here, we used this methodology to follow the effects of progesterone or progestin R5020 in combination with estradiol (E2) and cAMP on inducing the decidualization of human endometrial cells. We further implemented a statistical model to detect the differences in the kinetics of decidualization of the two hormonal stimuli before all the cell population acquired the decidual phenotype. We found that 2 days after stimulation are sufficient to detect statistical differences in morphology between decidualization induced and control cells. Here, we detail the model and scripts in order to provide a useful, practical and low cost tool to evaluate morphological aspects of endometrial stromal differentiation. Availability and implementationSee supplementary methods Supplementary informationSupplementary data is available online.

bioinformatics↗

Higher-order chromatin organization defines PR and PAX2 binding to regulate endometrial cancer cell gene expression

Estrogen (E2) and Progesterone (Pg), via their specific receptors (ER and PR respectively), are major determinants in the development and progression of endometrial malignancies. Here, we have studied how E2 and the synthetic progestin R5020 affect genomic functions in Ishikawa endometrial cancer cells. Using ChIPseq in cells exposed to the corresponding hormones, we identified cell specific binding sites for ER (ERbs) and PR (PRbs), which mostly correspond to independent sites but both adjacent to sites bound by PAX2. Analysis of long-range interactions by Hi-C showed enrichment of regions co-bound by PR and PAX2 inside TADs that contain differentially progestin-regulated genes. These regions, which we call "progestin control regions" (PgCRs), exhibit an open chromatin state prior to the exposure to the hormone. Our observations suggest that endometrial response to progestins in differentiated endometrial tumor cells results in part from binding of PR together with partner transcription factors to PgCRs, compartmentalizing hormone-independent open chromatin.

genomics↗