Biology subjects

Saraceno, C.

Publications and source records attributed to Saraceno, C..

3 recordsLinked to original sources

bioRxiv2026

Functional Analyses of Histone Methyltransferases in Sea Lamprey Embryos Undergoing Programmed DNA Elimination

During early embryogenesis, the sea lamprey (Petromyzon marinus) undergoes a dramatic form of genome reprogramming wherein specific chromosomes are selectively eliminated from somatic progenitor cells. These programmatic elimination events effectively silence all genes on these chromosomes in all somatic cells. Previous studies in lamprey and other eliminating species have shown that epigenetic silencing marks are enriched on germline-specific chromosomes during programmed elimination. These silencing marks include the histone marks H3K9me3 and H4K20me3, which are respectively deposited by KMT1A/SUV39 and KMT5/SUV420 methyltransferases. To test whether lamprey homologs of these methyltransferases contribute to deposition of silencing marks on eliminated (micronucleated) chromatin and whether these marks contribute to the highly coordinated process of DNA elimination in sea lamprey, we used Cas9 gene editing, lightsheet imaging and RNA sequencing to investigate their potential roles in DNA elimination and more generally during early development. Analysis of knockout embryos for four histone methyltransferases show that these genes contribute to the deposition of repressive histone marks on elimination micronuclei, but are not essential for programmed DNA elimination per se. Analysis of later embryogenic stages suggests that these marks may contribute to interim silencing of germline-specific chromosomes, and reveals major impacts on post-blastula survival and development.

evolutionary biology↗

bioRxiv2025

Outer Kinetochore Proteins form Linear Elements to Regulate Vesicle Transport

During cell division, several key regulators of chromosome segregation play additional roles during vesicle trafficking required for cytokinesis. During anaphase I in C. elegans oocytes, chromosome segregation is coordinated with vesicle trafficking to support polar body extrusion and exocytosis of extracellular matrix material. Prior to anaphase, numerous outer kinetochore proteins localize to mysterious "linear element" structures throughout the cortex in addition to chromosomes, which has been observed in oocytes of multiple species. Linear elements initially form as puncta just before nuclear envelope breakdown and rapidly assemble into larger elongated structures. As linear elements grow, they form large clusters with secretory vesicles, initiating an elaborate transport mechanism that distributes vesicles throughout the cortex by anaphase I. Linear elements dynamically interact with microtubules and endoplasmic reticulum during this process. Microtubules are required for linear element assembly, motility, and clustering with vesicles. Knockdown of a plus end microtubule binding kinetochore component also inhibits linear element growth and vesicle clustering, but not the motility of linear element puncta. Depletion of several outer kinetochore proteins causes defects in extracellular matrix formation. Therefore, linear elements facilitate the microtubule-dependent transport of vesicles for their proper distribution in the cortex. We hypothesize that outer kinetochore complexes coordinate movements of chromosomes and cytoplasmic membranes to enhance the fidelity of cell division.

cell biology↗

bioRxiv2025

MICROGLIAL EXTRACELLULAR VESICLES MEDIATE C1Q DEPOSITION AT THE PRE-SYNAPSE AND PROMOTE SYNAPTIC PRUNING

C1q is released by microglia, localizes on weak synapses and acts as a tag for microglial synaptic pruning. However, how C1q tags synapses during the pruning period remains to be fully elucidated. Here, we report that C1q is delivered by microglia to pre-synaptic sites that externalize phosphatidylserine through extracellular vesicles. Using approaches to increase or reduce vesicles production in microglia, by C9orf72 knock out or pharmacological inhibition respectively, we provided mechanistic evidence linking extracellular vesicle release to pre-synaptic remodelling in neuron-microglia cultures. In C9orf72 knockout mice, we confirmed larger production of microglial extracellular vesicles, and showed augmented C1q presynaptic deposition associated with enhanced engulfment by microglia in the early postnatal hippocampus. Finally, we provide evidence that microglia physiologically release more vesicles during the period of postnatal circuit refinement. These findings implicate abnormal release of microglial extracellular vesicles in both neurodevelopmental and age-related disorders characterized by dysregulated microglia-mediated synaptic pruning.

neuroscience↗