Biology subjects

Sanchez-Flores, A.

Publications and source records attributed to Sanchez-Flores, A..

2 recordsLinked to original sources

bioRxiv2019

One step towards bioremediating a heavily polluted river: Metagenomic insights on the function of microbial community

The objective of this study is to understand the functional potential of the microbial community related to bioremediation activity and its relationship with the pollution of each site to enhance the future design of more accurate bioremediation processes. Water samples were collected at four sampling sites along the Apatlaco River (S1-S4), and a whole metagenome shotgun sequencing was performed to know and understand the microbial community involved in bioremediation. Additionally, HMMER was used for searching sequence homologs related to PET and polystyrene biodegradation and metal transformation in Apatlaco River metagenomes. The Apatlaco River is characterized by the presence of a broad spectrum of microorganisms with the metabolic potential to carry out bioremediation activities. Every site along the Apatlaco River has a particular community to perform bioremediation activities. The first site S1 has Thiomonas, Polaromonas, Pedobacter, and Myroides, S2 has Pedobacter, Myroides, Pseudomonas and Acinetobacter, S3, Thiomonas, Myroides, Pseudomonas, Acinetobacter and Aeromonas; S4, Thiomonas, Myroides and Pseudomonas, Thauera.\n\nFurthermore, every site is rich in specific enzymes such as S1 has dioxygenase and dehydrogenase, which can degrade Catechol, Biphenyl, Naphthalene, and Phthalate. While, S2 and S3 are rich in dioxygenase and decarboxylating dehydrogenases to degrade Toluene, Fluorobenzoate, Xylene, Phenylpropanoate, and Phenol. S3 also has monooxygenases which degrade Benzene, and all the earlier mentioned enzymes were also found at S4.

ecology↗

bioRxiv2019

Water quality assessments and metagenomic analysis of the polluted river Apatlaco, Mexico

The aim of this study is to analyze the water quality parameters and bacterial diversity and thereby understand the effect of water quality on the microbial population structure in the river. The following parameters: total coliforms, chemical oxygen demand, harness, ammonium, nitrite, nitrate, total Kjeldahl nitrogen, dissolved oxygen, total phosphorus, total dissolved solids, and temperature were analyzing along 17 sampling points in the river. The worst levels of pollution were 510 mg/L chemical oxygen demand, 7 mg/L nitrite, 45 mg/L nitrate, 2 mg/L dissolved oxygen, and 756 mg/L of total dissolved solids. Whole metagenome shotgun sequencing was performed at 4 key points along the river (P1,P7,P10 and P17), the first point had clean water and the other points were polluted, as a result of this pollution, the structure of microbial communities along the river have changed. Proteobacteria and Bacteroidetes were the most representative phyla with a relative abundance of 57 and 43% respectively for P1, 82 and 15% for P7, 69 and 27% for P10 and 87 and 10% for the last point P17. P1 is rich in microorganism such as Limnohabitans a planktonic bacterium very common in freshwater ecosystems. However, in P7, P10 and P17 are rich in opportunistic pathogens such as Acinetobacter Arcobacter and Myroides that endangers the health of around 1.6 million people which live around the area. These results elucidate the influence of the pollution on the microbial community and the likely effects on the health of the people around.

ecology↗