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Samuel, M. A.

Publications and source records attributed to Samuel, M. A..

6 recordsLinked to original sources

Region-specific Brain Targets Drive Circuit Formation and Maturation of Human Retinal Ganglion Cells

Human vision relies on retinal ganglion cells (RGCs), and their connectivity with distinct brain regions enables higher order visual processing. RGCs vary considerably between species, and many model organisms display distinct RGC types and innervation patterns from those in humans. There is thus a need for robust models of human RGC circuit formation that preserves innervation specificity. Here, we developed an in vitro microfluidics eye-to-brain connectivity model using human pluripotent stem cell (hPSC)-derived RGCs to assess brain region-specific connectivity features. We found that cultured human RGCs segregate their dendrites and axons and display axonal features that align with those of their in vivo human RGC counterparts. To identify brain target surrogates, we conducted bioinformatic similarity assessments, which revealed high conservation and lower variability between human LGN and mouse counterparts relative to available thalamocortical organoids. We thus provided region-specific mouse visual targets to assess specificity and activity. We found that human RGC axons terminals differentially connected with distinct mouse retinorecipient brain regions and promoted region-specific neural activity. Increased synapse formation occurred between RGCs and lateral geniculate neurons relative to that with suprachiasmatic nucleus neurons, modeling retina brain connectivity differences. Both retinorecipient partners induced the formation of more synapses relative to non-retinorecipient brain target controls. These results suggest that human RGC innervation properties are preserved in culture systems and that human RGCs can differentially sense and respond to retinorecipient targets to control wiring outcomes. These systems may aid in the discovery of wiring factors for potential therapeutic applications. Significance StatementThis study presents a novel in vitro model to investigate human retinal ganglion cell (RGC) connectivity, using human pluripotent stem cell-derived RGCs and specific mouse brain targets. By modeling eye-to-brain connections in a microfluidics device, we reveal that cultured human RGCs can form selective, region-specific synapses with mouse-derived brain areas like the lateral geniculate nucleus and the suprachiasmatic nucleus. The findings demonstrate that human RGCs retain their innervation specificity presences in culture, mimicking in vivo human connectivity patterns. This model thus provides a powerful tool for understanding the factors controlling human-specific brain wiring, with potential applications in therapies for visual and neurological disorders.

neuroscience↗

Characterizing the Role of Endocarp A and B Cells Layers During Pod (silique) Development in Brassicaceae

The process of silique dehiscence is essential for proper dispersal of seeds at the end of a plants lifecycle. Current research focuses on genetic manipulation to mitigate this process and enhance shatter tolerance in crop plants, which has significant economic implications. In this study, we have conducted a time-course analysis of cell patterning and development in valve tissues of Arabidopsis thaliana and closely related Triangle of U species from Brassicaceae. The goal was to decipher the detailed temporal developmental patterns of the endocarp a and b cell layers of the valve, specifically their degradation and lignification respectively. Additionally, we propose a new classification system for the lignification of the endocarp a cell layer: L1 indicates the cell closest to the replum, with L2 and L3 representing the second and third cells, respectively, each numerical increment indicating lignified cells farther from the replum. Our findings provide a foundational framework absent in current literature, serving as an effective blueprint for future genomic work aimed at modifying valve structures to enhance agronomic traits, such as reducing fiber (lignin) or increasing shatter tolerance.

plant biology↗

Disabling of ARC1 through CRISPR/CAS9 leads to a complete breakdown of self-incompatibility responses in Brassica napus

Self-incompatibility (SI) is a genetic mechanism utilized by many flowering plants to promote outcrossing by recognizing and rejecting self-pollen. While the molecular mechanisms controlling SI can differ in various families, plants in the Brassicaceae family have been found to regulate SI through a S-haplotype-specific receptor-ligand interaction. The recognition of self-pollen leads to the activation of ARMADILLO-REPEAT-CONTAINING1 (ARC1), an E3 ligase which is thought to degrade the compatibility factors required for pollen germination, thus resulting in SI. However, the role of ARC1 in SI in the Brassicaceae family has been disputed within the scientific community. While various studies demonstrate that the manipulation of ARC1 and its downstream targets can break-down the SI response, others show that the SI phenotype can be imparted to self-compatible cultivars without the ARC1 gene. This study investigated the involvement of ARC1 in SI through the generation of loss-of-function ARC1 mutants using CRISPR-Cas9 in B. napus. Loss of ARC1 resulted in complete breakdown of SI in two different S-haplotypes providing strong evidence for the essential nature of ARC1 for mounting a successful SI response.

plant biology↗

Rapid 3D-STORM imaging of diverse molecular targets in tissue

The precise organization of fine scale molecular architecture is critical for the nervous system and other biological functions and would benefit from nanoscopic imaging methods with improved accessibility, throughput, and native tissue compatibility. Here, we report RAIN-STORM, a rapid and scalable imaging approach that enables three-dimensional nanoscale target visualization for multiple subcellular and intracellular targets within tissue at depth. RAIN-STORM utilizes conventional tissue samples, readily available reagents in optimized formulas, requires no specialized sample handling, and is suitable for commercial instrumentation. To illustrate RAIN-STORMs ability for quantitative high-resolution nanoscopic tissue imaging, we utilized the well-organized but structurally complex retina. We show that RAIN-STORM is rapid and versatile, enabling 3D nanoscopic imaging of over 20 distinct targets to reveal known and novel nanoscale features of synapses, neurons, glia, and vascular. Further, imaging parameters are compatible with a wide range of tissue sources and molecular targets across a spectrum of biological structures. Finally, we show that this method can be applied to clinically derived samples and reveal the nanoscale distribution of molecular targets within human samples. RAIN-STORM thus enables rapid 3D imaging for a range of molecules, paving the way for high throughput studies of nanoscopic molecular features in intact tissue from diverse sources.

neuroscience↗

Stigma Receptivity is controlled by Functionally Redundant MAPK Pathway Components in Arabidopsis

In angiosperms, the process of pollination relies on species-specific interaction and signaling between the male (pollen) and female (pistil) counterparts where the interplay between several pollen and stigma proteins decides the fate of the pollen. In Brassicaceae, the dry stigmatic papillary cells control pollen germination by releasing resources only to compatible pollen thereby allowing pollen to hydrate and germinate. Despite the identification of a number of stigmatic proteins that facilitate pollination responses, the signaling mechanisms that regulate functions of these proteins have remained unknown. Here we show that, in Arabidopsis, an extremely functionally redundant mitogen-activated protein kinase (MAPK) cascade is required for maintaining stigma receptivity to accept compatible pollen. Our genetic analyses demonstrate that in stigmas, five MAPK kinases (MKKs), MKK1/2/3/7/9 are required to transmit upstream signals to two MPKs, MPK3/4, to mediate compatible pollination. Compromised functions of these five MKKs in the quintuple mutant (mkk1/2/3RNAi/mkk7/9) phenocopied pollination defects observed in the mpk4RNAi/mpk3 double mutant. We further show that this MAPK nexus converges on Exo70A1, a previously identified stigmatic compatibility factor essential for pollination. Given that pollination is the crucial initial step during plant reproduction, understanding the mechanisms that govern successful pollination could lead to development of strategies to improve crop yield.

plant biology↗

Progressive myoclonic epilepsy-associated gene Kctd7 regulates retinal neurovascular patterning and function

Neuron function relies on and instructs the development and precise organization of neurovascular units that in turn support circuit activity. However, our understanding of the molecular cues that regulate this relationship remains sparse. Using a high-throughput screening pipeline, we recently identified several new regulators of vascular patterning. Among these was the potassium channel tetramerization domain-containing protein 7 (KCTD7). Mutations in KCTD7 are associated with progressive myoclonic epilepsy, but how KCTD7 regulates neural development and function remains poorly understood. To begin to identify such mechanisms, we focus on mouse retina, a tractable part of the central nervous system that contains precisely ordered neuron subtypes supported by a trilaminar intravascular network. We find that deletion of Kctd7 results in defective patterning of the adult retina vascular network, resulting in increased branching, vessel length, and lacunarity. These alterations reflect early and specific defects in vessel development, as emergence of the superficial and deep vascular layers were delayed. These defects are likely due to a role for Kctd7 in inner retina neurons. Kctd7 it is absent from vessels but present in neurons in the inner retina, and its deletion resulted in a corresponding increase in the number of bipolar cells in development and increased vessel branching in adults. These alterations were accompanied by retinal function deficits. Together, these data suggest that neuronal Kctd7 drives growth and patterning of the vasculature and suggest that neurovascular interactions may participate in the pathogenesis of KCTD7-related human diseases.\n\nAlevy et al. Highlights O_LIKctd7 is required for normal retinal vascular organization and retinal function in adults.\nC_LIO_LIDeletion of Kctd7 disrupts the emergence of the superficial and deep vessel layers.\nC_LIO_LIKctd7 may impact vascular patterning through influencing neurons as it is expressed in and regulates bipolar cells.\nC_LIO_LIKctd7 driven neurovascular interactions may participate in the pathogenesis of KCTD7-related human diseases.\nC_LI\n\nLay SummaryNeuron function requires an organized vasculature to maintain brain health and prevent disease, but many neurovasculature regulatory genes remain unknown. Alevy et al. identify the progressive myoclonic epilepsy-associated gene Kctd7 as a key regulator of vascular development and retinal function. They further show that Kctd7 regulation of vessel patterning likely occurs downstream of its role in regulating the development or activity of specific neuron types. These data suggest that KCTD7-regulated neurovascular interactions may participate in the pathogenesis of associated human diseases.\n\n\n\nO_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=80 SRC=\"FIGDIR/small/647008v1_ufig1.gif\" ALT=\"Figure 1\">\nView larger version (37K):\norg.highwire.dtl.DTLVardef@176b8eorg.highwire.dtl.DTLVardef@1967120org.highwire.dtl.DTLVardef@1dcf4e5org.highwire.dtl.DTLVardef@151fce2_HPS_FORMAT_FIGEXP M_FIG C_FIG

neuroscience↗