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Salsbury, F.

Publications and source records attributed to Salsbury, F..

2 recordsLinked to original sources

Lithocholic acid induces T3SS-dependent formation of invasion-competent Shigella flexneri aggregates

Shigella flexneri causes shigellosis, the second leading cause of diarrheal deaths worldwide. The pathogen invades colonic epithelial cells using a type III secretion system (T3SS) that delivers effector proteins to remodel host actin cytoskeleton. Following invasion, S. flexneri acquires actin-based motility and spreads cell to cell, driving epithelial destruction and bloody diarrhea. These intracellular infection processes have been investigated primarily using exponentially growing planktonic bacteria. However, recent animal studies revealed that S. flexneri also forms multicellular aggregates in the colonic lumen, yet the function of this extracellular phase remains unclear. Here, we show that lithocholic acid (LCA), an abundant secondary bile acid in the colon, acts as a potent signal that induces S. flexneri aggregation at physiological concentrations ([≥]50 {micro}M). LCA-induced aggregation depends on the T3SS and its tip protein IpaD, which increases aggregate size. Compared to non-aggregating controls, LCA-induced aggregates initiate invasion by eliciting a more robust actin remodeling and rapid T3SS activation during early interactions with colonic epithelial HT-29 cells. These findings identify LCA as a luminal cue that links the extracellular aggregation with intracellular infection, through a new aggregate-mediated mode of epithelial invasion.

microbiology↗

Unraveling the Impact of W215A/E217A Mutations on Thrombin Dynamics and Thrombomodulin Binding through Molecular Dynamics Simulations

Thrombin, a central serine protease in hemostasis, exhibits dual functionality in coagulation processes--favoring fibrinogen cleavage in its native form while shifting towards protein C activation when complexed with thrombomodulin (TM). Thrombin also plays roles in cancer-associated thrombosis and may be involved in metastasis and tumorigenesis. The W215A/E217A (WE) double mutant of thrombin presents a unique case, with its fibrinogen cleavage activity diminished by 19,000-fold, contrasting a modest 7-fold reduction in protein C activation in the presence of TM. The differential substrate specificity of this mutant raises fundamental questions about the underlying molecular mechanisms. In this study, we employed all-atom microsecond-scale molecular dynamics (MD) simulations, complemented by Root Mean Square Fluctuation (RMSF) analysis, clustering algorithms, PCA-based free-energy surfaces, and logistic regression modeling, to dissect the structural and allosteric changes driving thrombins substrate specificity. Our results unveil distinct conformational states within the catalytic triad, each optimized for specific substrate interactions. We demonstrate that the WE mutations synergize with TM456 binding, resulting in altered hydrogen bond networks and distinct free energy landscapes. A key finding of our research is the identification of ARG125 as a pivotal element in these interactions, consistently forming critical hydrogen bonds across different thrombin variants. The persistent role of ARG125 not only elucidates aspects of thrombins functional plasticity but also positions it as a promising target for novel therapies. This comprehensive analysis enhances our understanding of thrombins structural dynamics, paving the way for more effective and targeted therapeutics.

biophysics↗