Search bioRxiv⌕ Search

Biology subjects

Sakharkar, A.

Publications and source records attributed to Sakharkar, A..

2 recordsLinked to original sources

Systemic Genome Correlation Loss as a Central Characteristic of Spaceflight

Spaceflight exposes the human body to a unique combination of stressors--microgravity, radiation, and confinement--that induces multisystemic physiological dysregulation. Traditional transcriptomic analyses have focused on differential expression to identify key genes, yet this approach fails to explain why astronauts experience systemic fragility despite often subtle changes in gene abundance. Here, we present a comprehensive meta-analysis of 10 independent transcriptomic and genomic datasets (N = 136) from the NASA Open Science Data Repository. By shifting focus from gene abundance to gene-gene correlation topology, we identify Systemic Genome Correlation Loss as a central biosignature of spaceflight. We show that the regulatory architecture of the transcriptome undergoes a profound decoherence in microgravity, shifting the global correlation distribution toward stochasticity (p < 10-15). This phenomenon is universal across tissues and independent of gene variance. We identify a massive population of 760 genes that maintain stable expression levels but lose over 500 regulatory connections each, outnumbering canonical differentially expressed genes by three-to-one. Finally, we demonstrate that cells preserve the connectivity of survival-critical DNA repair networks preferentially while allowing mitochondrial and synaptic networks to shatter. These findings suggest that astronaut health risks are driven by the entropic decay of regulatory synchronization, proposing a new paradigm for countermeasure development focused on network stabilization rather than pathway inhibition.

genomics↗

Designing a novel monitoring approach for the effects of space travel on astronauts' health

Space exploration and extraterrestrial civilization have fascinated humankind since the earliest days of human history. However, it was only until last century that humankind finally began taking significant steps towards these goals by sending astronauts into space, landing on the moon, and building the International Space Station. However, space voyage is very challenging and dangerous, and astronauts are under constant space radiation and microgravity. It has been shown that astronauts are at a high risk of developing a broad range of diseases/disorders. Thus, it is critical to develop a rapid and effective assay to monitor astronauts health in space. In this study, gene expression and correlation patterns were analyzed for 10 astronauts (8 male and 2 female) using the publicly available microarray dataset E-GEOD-74708. We identified 218 differentially expressed genes between In-flight and Pre-flight and noticed that space travel decreased genome regulation and gene correlations across the entire genome, as well as individual signaling pathways. Furthermore, we rationally designed a rapid assay of 32 genes which could be used to monitor astronauts health during space travel. Further studies, including microgravity experiments, are warranted to optimize and validate the proposed assay.

molecular biology↗