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Biology subjects

SEKER, U. O. S.

Publications and source records attributed to SEKER, U. O. S..

2 recordsLinked to original sources

Binding Behavior of Microbial Functional Amyloidson Solid Surfaces

Self-assembling protein subunits hold great potential as biomaterials with improved functions. Among the self-assembled protein structures functional amyloids are promising unique properties such as resistance to harsh physical and chemical conditions their mechanical strength, and ease of functionalization. Curli proteins, which are functional amyloids of bacterial biofilms can be programmed as intelligent biomaterials. In order to obtain controllable curli based biomaterials for biomedical applications, and to understand role of each of the curli forming monomeric proteins (namely CsgA and CsgB from Escherichia coli) we characterized their binding kinetics to gold, hydroxyapatite, and silica surfaces. We demonstrated that CsgA, CsgB, and their equimolar mixture have different binding strengths for different surfaces. On hydroxyapatite and silica surfaces, CsgB is the crucial element that determines the final adhesiveness of the CsgA-CsgB mixture. On the gold surface, on the other hand, CsgA controls the behavior of the mixture. Those findings uncover the binding behavior of curli proteins CsgA and CsgB on different biomedically valuable surfaces to obtain a more precise control on their adhesion to a targeted surface.

microbiology↗

Genetic Circuits to Detect Nanomaterial Triggered Toxicity through Engineered Heat Shock Response Mechanism

Biocompatibility assessment of nanomaterials has been of great interest due to their potential toxicity. However, conventional biocompatibility tests are short of providing a fast toxicity report. We developed a whole cell based biosensor to track biocompatibility of nanomaterials with the aim of providing fast feedback for engineering nanomaterials with lower toxicity levels. We have engineered promoters of four heat shock response proteins. As an initial design a reporter coding gene was cloned to downstream of the promoter regions selected. Initial results indicated that native HSP promoter regions were not very promising to generate signals with low background signals. Introducing riboregulators to native promoters eliminated unwanted background signal almost entirely. Unfortunately, this approach also leads a decrease in expected sensor signal. Thus, a repression based genetic circuit, inspired from HSP mechanism of Mycobacterium tuberculosis was constructed. These genetic circuits can report the toxicity of Quantum Dot nanoparticles in one hour with high precision. Our designed nanoparticle toxicity sensors can provide quick reports which can lower the demand for additional experiments with more complex organisms.

synthetic biology↗