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Biology subjects

Ryu, J. E.

Publications and source records attributed to Ryu, J. E..

3 recordsLinked to original sources

The astrocyte-enriched gene Tmem44 regulates circadian protein translation in mouse astrocytes

Astrocytes contain cell-autonomous circadian clocks, but how astrocyte-enriched clock-controlled genes feed back onto the circadian clock remains poorly understood. Here, we identify transmembrane protein 44 (Tmem44) as an astrocyte-enriched circadian transcript whose protein product regulates clock protein abundance through translational control. Tmem44 mRNA oscillated in cultured mouse cortical astrocytes in a BMAL1-dependent manner, whereas TMEM44 protein was constitutively expressed and localized to the endoplasmic reticulum. Acute Tmem44 knockdown reduced BMAL1 and PER2 protein levels without altering their mRNA levels or degradation kinetics, and dampened the amplitude and advanced the phase of Per2-luciferase circadian rhythms. SUnSET assays revealed that Tmem44 knockdown decreased global nascent protein synthesis. Proximity labeling and co-immunoprecipitation further showed that TMEM44 associates with ribosomal proteins and ER-associated translational machinery. Importantly, global protein synthesis exhibited circadian oscillation in synchronized astrocytes, and this rhythmic translation was abolished by Tmem44 knockdown. These findings identify TMEM44 as an astrocyte-enriched, ER-resident translational regulator that supports rhythmic protein synthesis and sustains proper amplitude and phase of the astrocyte circadian clock.

neuroscience↗

Circadian regulation of endoplasmic reticulum calcium response in mouse cultured astrocytes

The circadian clock, an internal time-keeping system orchestrates 24-hour rhythms in physiology and behavior by regulating rhythmic transcription in cells. Astrocytes, the most abundant glial cells, play crucial roles in central nervous system (CNS) functions, but the impact of the circadian clock on astrocyte functions remains largely unexplored. In this study, we identified 412 circadian rhythmic transcripts in cultured mouse cortical astrocytes through RNA sequencing. Gene Ontology analysis indicated that genes involved in Ca2+ homeostasis are under circadian control. Notably, Herpud1 (Herp) exhibited robust circadian rhythmicity at both mRNA and protein levels, a rhythm disrupted in astrocytes lacking the circadian transcription factor, BMAL1. HERP regulated endoplasmic reticulum (ER) Ca2+ release by modulating the degradation of inositol 1,4,5-trisphosphate receptors (ITPRs). ATP-stimulated ER Ca2+ release varied with the circadian phase, being more pronounced at subjective night phase, likely due to the rhythmic expression of ITPR2. Correspondingly, ATP-stimulated cytosolic Ca2+ increases were heightened at the subjective night phase. This rhythmic ER Ca2+ response led to circadian phase-dependent variations in the phosphorylation of Connexin 43 (Ser368) and gap junctional communication. Given the role of gap junction channel (GJC) in propagating Ca2+ signals, we suggest that this circadian regulation of ER Ca2+ responses could affect astrocytic modulation of synaptic activity according to the time of day. Overall, our study enhances the understanding of how the circadian clock influences astrocyte function in the CNS, shedding light on their potential role in daily variations of brain activity and health.

neuroscience↗

Computational docking reveals evolutionary conservation of a specific interaction between 15d-Prostaglandin-J2 and eIF4A.

15-deoxy-delta 12,14-prostaglandin J2 (15d-PGJ2) is anti-inflammatory/antineoplastic prostaglandin which functions through covalent binding to cysteine residues of various target proteins. We previously showed that 15d-PGJ2 mediated anti-inflammatory responses are dependent on the translational inhibition through its interaction with eIF4A. Binding of 15d-PGJ2 to eIF4A specifically blocks the interaction between eIF4G and eIF4A leads to the formation of stress granules (SGs), which cluster mRNAs with inhibited translation. Here we show that the binding between 15d-PGJ2 and eIF4A specifically blocks the interaction between the MIF4G domain of eIF4G and eIF4A. To reveal the mechanism of this interaction, we used computational simulation-based docking studies and identified that the carboxyl tail of 15d-PGJ2 could stabilize the binding of 15d-PGJ2 to eIF4A through arginine 295 of eIF4A, which is the first suggestion that the 15d-PGJ2 tail play a physiological role. Interestingly, the putative 15d-PGJ2 binding site on eiF4A is conserved across many species, suggesting a biological role. Our data propose that studying 15d-PGJ2 and its targets will may uncover new therapeutic approaches in anti-inflammatory drug discovery.

molecular biology↗