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Biology subjects

Ryan, C. P.

Publications and source records attributed to Ryan, C. P..

4 recordsLinked to original sources

Incomplete adaptation to surface movement during hand reaching

Humans can effectively adapt to changes in the environment to maintain adequate motor performance in a vast range of situations. However, residual errors tend to persist when strong a priori assumptions about the statistical regularities of the environment are violated. In our study, we challenged the expectation that inanimate objects are usually at rest. To this end, we used a robotic interface to move a plate over which participants slid their finger while reaching towards a target. We found limited evidence of adaptation after prolonged exposure to this perturbation, and only when visual feedback about hand position was provided. Although participants were aware of the motion of the contact surface, explicit knowledge about its direction was limited. Our results provide important insights on the limits of adaptation to motion perturbation in the somatosensory system, which can inform the design of technology applications such as haptic interfaces and collaborative robots.

neuroscience↗

Comparison of Infinium MethylationEPIC v2.0 to v1.0 for human population epigenetics: considerations for addressing EPIC version differences in DNA methylation-based tools

The recently launched Illumina Infinium MethylationEPIC v2.0 (EPICv2), successor of MethylationEPIC v1.0 (EPICv1), retains a majority of probes in EPICv1, while expanding coverage of regulatory elements. The concordance between the two EPIC versions in DNA methylation-based tools has not yet been investigated. To address this, DNA methylation was profiled on both versions using matched blood samples across four cohorts spanning early to late adulthood. High concordance between versions at the array level but variable agreement at the individual probe level was noted. A significant contribution of EPIC version to DNA methylation variation was observed, though it was to a smaller extent compared to sample relatedness and cell type composition. Modest but significant differences in DNA methylation-based estimates between versions were observed, irrespective of the data preprocessing method used. Adjustments for EPIC version or calculation of estimates separately for each version largely mitigated these version-specific discordances. This work emphasizes the importance of accounting for EPIC version differences in research scenarios, especially in meta-analyses and longitudinal studies that require data harmonization across versions. Summary blurbOur work illustrates the importance of accounting for EPIC version in DNA methylation-based tools, specifically in research scenarios when samples profiled across different versions are harmonized.

genomics↗

The CALERIE™ Genomic Data Resource

Caloric restriction (CR) slows biological aging and prolongs healthy lifespan in model organisms. Findings from CALERIE-2 - the first ever randomized, controlled trial of long-term CR in healthy, non-obese humans - broadly supports a similar pattern of effects in humans. To expand our understanding of the molecular pathways and biological processes underpinning CR effects in humans, we generated a series of genomic datasets from stored biospecimens collected from n=218 participants during the trial. These data constitute the first publicly-accessible genomic data resource for a randomized controlled trial of an intervention targeting the biology of aging. Datasets include whole-genome SNP genotypes, and three-timepoint-longitudinal DNA methylation, mRNA, and small RNA datasets generated from blood, skeletal muscle, and adipose tissue samples (total sample n=2327). The CALERIE Genomic Data Resource described in this article is available from the Aging Research Biobank. This multi-tissue, multi-omic, longitudinal data resource has great potential to advance translational geroscience.

genomics↗

The discrimination of tactile speed in absence of texture elements: Role of deformation and vibratory cues

Motion encoding in touch relies on multiple cues, such as displacements of traceable texture elements, friction-induced vibrations, and gross fingertip deformations by shear force. We evaluated the role of deformation and vibration cues in tactile speed discrimination. To this end, we tested the discrimination of speed of a moving smooth glass plate, and compared the precision of the responses when the same task was performed with a plate having a fine texture. Participants performed the task with and without masking vibrations. Speed discrimination was nearly as precise among the two surface types, as assessed by the steep slope of the psychometric function. Consistent with our previous work, high-frequency vibrations impaired the ability of the participants in discriminating surface speed. Results of the current study showed that it is possible to discriminate motion speed even in absence of a raised texture. HighlightsO_LIOn a smooth surface, humans are able to discriminate the speed of a moving surface by frictional motion cues C_LIO_LIThe precision of speed discrimination is nearly the same with smooth and fine-textured surface types C_LIO_LIHigh frequency vibrations impair the ability to discriminate speed of moving surfaces C_LI

neuroscience↗