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Ryabichko, S.

Publications and source records attributed to Ryabichko, S..

2 recordsLinked to original sources

δ-Catenins couple cadherin adhesions to phospholipid-rich membrane domains

{delta}-Catenins interact with both classical and desmosomal cadherins and play essential, yet incompletely understood, role in adherens junctions (AJs) and desmosomes. According to the prevailing model, {delta}-catenins are recruited to these junctions exclusively through direct binding to the cadherin juxtamembrane domain (JMD). Here, we show that plakophilin 4 (Pkp4), one of the AJ-associated {delta}-catenins, is recruited into AJs through two distinct and independent mechanisms. The first is the conventional pathway based on direct interaction with the cadherin JMD. The second is a previously unrecognized mechanism that targets Pkp4 specifically to lateral AJs, submicron-sized, exceptionally stable junctions located along the mid-lateral region of epithelial cell-cell contacts. This targeting occurs independently of the cadherin JMD but requires an interaction with phospholipid-rich plasma membrane domains. We identify the conserved insert between ARM repeats 5 and 6 as the phospholipid-binding module of Pkp4. Because both membrane-binding determinants within this insert, a palmitoylated cysteine residue and a polybasic motif, are highly conserved throughout the {delta}-catenin family, our findings suggest that recognition of specialized plasma membrane domains is a general property of {delta}-catenins. We propose that the interplay between cadherin- and phospholipid-dependent targeting mechanisms enables individual {delta}-catenins to selectively stabilize distinct cadherin-based cell-cell junctions, thereby contributing to the overall architecture of the cell-cell adhesion system.

cell biology↗

Optogenetic control of the Bicoid morphogen reveals fast and slow modes of gap gene regulation

Developmental patterning networks are regulated by multiple inputs and feedback connections that rapidly reshape gene expression, limiting the information that can be gained solely from slow genetic perturbations. Here we show that fast optogenetic stimuli, real-time transcriptional reporters, and a simplified genetic background can be combined to reveal quantitative regulatory dynamics from a complex genetic network in vivo. We engineer light-controlled variants of the Bicoid transcription factor and study their effects on downstream gap genes in embryos. Our results recapitulate known relationships, including rapid Bicoid-dependent expression of giant and hunchback and delayed repression of Kruppel. In contrast, we find that the posterior pattern of knirps exhibits a quick but inverted response to Bicoid perturbation, suggesting a previously unreported role for Bicoid in suppressing knirps expression. Acute modulation of transcription factor concentration while simultaneously recording output gene activity represents a powerful approach for studying how gene circuit elements are coupled to cell identification and complex body pattern formation in vivo.

developmental biology↗