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Biology subjects

Ruth, P. S.

Publications and source records attributed to Ruth, P. S..

3 recordsLinked to original sources

Deep learning models detect neuromuscular disease and quantify functional impairment from video-derived biomechanics data

Measurements of human movement are critical for evaluating patients with neuromuscular diseases. However, current clinical tools are limited in sensitivity and can fail to detect the full spectrum of movement changes patients may exhibit. These limitations can obscure early signs of decline, delaying interventions that could preserve function and independence. OpenCap, a smartphone application that performs video-based markerless motion capture, can help address this gap by enabling scalable, out-of-lab measurements of human movement. Here, we present a method for both detecting disease and quantifying the severity of impaired movement from smartphone videos of patient motion. We used OpenCap to measure kinematics from 337 individuals with diagnoses spanning 12 rare, genetically-defined neuromuscular diseases and 78 age-matched healthy controls. Our dataset is the largest existing publicly available resource of body segment kinematics for this class of diseases. These data were collected in neuromuscular clinics during regular clinic visits as well as at conferences and community events across the United States. We trained deep learning models on these kinematic time series to differentiate between participants with neuromuscular disease and controls (AUROC = 0.97 [0.93-1.00]). We also developed a movement impairment severity score that correlates with both participant ratings of their own functional abilities ({rho} = -0.81, p < 0.001) and existing clinical tests of movement capabilities such as run speed ({rho} = -0.83, p < 0.001). Our methods for detecting disease and deriving quantitative biomarkers of movement impairment from smartphone videos have the potential to complement clinical assessments, inform screening protocols, and improve clinical trial endpoints.

bioengineering↗

StaBLE: digital metrics capture balance performance across a wide spectrum of balance tasks and abilities

Balance is fundamental to mobility and independence, yet it remains difficult to measure in a way that is both clinically meaningful and feasible for widespread adoption. There is a need for more quantitative, objective, and accessible balance assessments. To this end, we created the Stanford Balance Level Evaluation (StaBLE), a battery of 18 balance-challenging tasks and accompanying digital performance metrics computed from video that aimed to capture widely ranging balance abilities across 180 participants. We validated the StaBLE score against existing clinical scales and found that it correlated with age ({rho} = -0.76, p<0.001), the Activities-Specific Balance Confidence Scale ({rho} = 0.60, p<0.001), a Mini-Balance Evaluation Systems Test task ({tau}=0.55, p<0.001), 4-Stage Balance Test ({tau} = 0.55, p<0.001), and Short Physical Performance Battery ({tau} =0.57, p<0.001). StaBLE overcame ceiling effects in these existing scales and had a different underlying distribution for those identified at risk of falling and not (KS: 0.67, p<0.001). To reduce the time it takes to perform the test, we identified subsets of balance tasks that best predicted the StaBLE score across different populations. Together, our dataset, balance assessment protocol, and performance-based score demonstrate the validity of digital measures of balance.

bioengineering↗

Vascular waveform analysis using Bayesian pulse deconvolution

Vascular waveforms, which measure bulk flow in blood vessels, are widely used to measure vital signs, diagnose conditions, and predict long-term health outcomes. Analyzing vascular waveforms depends on three fundamentally interdependent tasks: signal filtering, pulse timing detection, and pulse shape extraction. We hypothesized that Bayesian pulse deconvolution can achieve improved performance on all three tasks by solving them jointly. This method uses an analytical, generative model of vascular waveforms with priors informed by physical and biological domain knowledge. In simulations, Bayesian pulse deconvolution achieves better performance on all tasks compared with existing algorithms: 90% reduction of median filtering error, 60% reduction in pulse timing error, and 85% reduction in shape extraction error. The advantages in simulations extend to human recordings of photoplethysmography waveforms. Taking real time-synchronized electrocardiogram R-R intervals as a proxy ground truth, Bayesian pulse deconvolution achieves 40% lower pulse interval estimation error (RMSE = 5.1 ms) compared with typical algorithms (RMSE = 8.3 ms, p=1e-10). By extracting more accurate and informative insights from vascular waveforms, Bayesian pulse deconvolution could advance a wide array of health technologies that rely on interpreting signals from blood vessels.

bioengineering↗