Biology subjects

Rushton, J.

Publications and source records attributed to Rushton, J..

4 recordsLinked to original sources

bioRxiv2024

Plant responses to wheat curl mites and wheat streak mosaic virus (WSMV): first evidence of virus tolerance in wheat

Wheat curl mites (WCM) are arthropod pests that pose significant threats to wheat crops by causing direct damage by feeding, and transmitting viruses such as Wheat Streak Mosaic Virus (WSMV), Triticum Mosaic Virus (TriMV), and High Plains Wheat Mosaic Virus (HPWMoV), leading to substantial losses in wheat, barley, oats, and rye. Over three years of field screening, we found that the cultivar Hatcher consistently produced higher yields under high WSMV disease pressure, outperforming Mace and TAM112, which carry the Wsm1 gene and a QTL for curl mite resistance, respectively, indicating tolerance. To investigate the mechanisms underlying the tolerance phenotype in Hatcher, we compared its response to WCM and WSMV infection with a susceptible genotype, CO15D173R. Transcriptomic analysis revealed a nuanced interplay between plant defense and growth in Hatcher, with upregulation of genes related to jasmonic acid (JA), salicylic acid (SA), and abscisic acid (ABA) pathways, indicating a coordinated defense response. The activation of lignin biosynthesis genes points to a potential role of cell wall strengthening in deterring WCM and WSMV. Additionally, the regulation of genes involved in growth-related hormonal pathways such as gibberellic acid (GA), and brassinosteroids (BR) highlights Hatchers ability to maintain growth disease pressure. Our findings provide insight into the intricate network of phytohormones, growth-defense trade-offs, and cell wall modifications contributing to Hatchers tolerance to WCM and WSMV. This knowledge can inform the development of tolerant wheat varieties and enhance integrated pest management strategies, ultimately safeguarding wheat production.

plant biology↗

bioRxiv2020

Small-scale commercial chicken production: A risky business for farmers in the Mekong Delta of Vietnam

Small-scale farming of meat chicken flocks using local native breeds contributes to the economy of many rural livelihoods in Vietnam and many other low- and middle-income countries (LMICs). These systems are also the target of high levels of antimicrobial use (AMU); however little is known about the profitability and sustainability of such systems. Since small scale farms are commercial enterprises, this knowledge is essential in order to develop successful strategies aimed at curbing excessive AMU. Using longitudinal data from 203 randomly selected small-scale (100-2,000 chickens) native chicken flocks raised in 102 farms in Dong Thap province (Mekong Delta, Vietnam), we investigated the financial and economic parameters of such systems and the main constraints to their sustainability. Feed accounted for the largest financial cost (flock median 49.5% [Inter-quartile range (IQR) 41.5-61.8%]) of total costs, followed by day-old-chicks (DOCs) (median 30.3% [IQR 23.2-38.4%]), non-antimicrobial health-supporting products (median 7.1% [IQR 4.7-10.5%]), vaccines (median 3.1% [IQR 2.2-4.8%]), equipment (median 1.9% [IQR 0.0-4.9%]) and antimicrobials (median 1.9% [IQR 0.7-3.6%]). Excluding labor costs, farmers achieved a positive return on investment (ROI) from 120 (59.1%) flocks, the remainder generated a loss (median ROI 124% [IQR 36-206%]). Higher ROI was associated with higher flock size and low mortality. There was no statistical association between use of medicated feed and flock mortality or chicken bodyweight. The median daily income per person dedicated to raising chickens was 202,100 VND, lower than alternative rural labour activities in the Mekong Delta. In a large proportion of farms (33.4%), farmers decided to stop raising chickens after completing one cycle. Farmers who dropped off chicken production purchased more expensive feed (in 1,000 VND per kg) (11.1 [10.6-11.5] vs. 10.8 [10.4-11.3] for farms that continued production (p=0.039) and experienced higher chicken mortality (28.5% [12.0-79.0%] vs. 16 [7.5-33.0%] (p=0.004). The turnover of farmers raising chickens in such systems represents a challenge in targeting messages on appropriate AMU and on chicken health. In order to ensure sustainability of small-scale commercial systems, advisory services need to be available as farmer initiate new flocks, and support them in the early stages to help overcome their limited experience and skills. This targeted approach would support profitability whilst reducing risk of emergence of AMR and other disease problems from these systems.

microbiology↗

bioRxiv2020

Reducing antimicrobial usage in small-scale chicken farms in Vietnam: A three-year intervention study

Indiscriminate antimicrobial use (AMU) in animal production is a driver of antimicrobial resistance globally, with a need to define sustainable AMU-reducing interventions in small-scale farms typical of low- and middle-income countries. We conducted a before-and-after intervention study on a random sample of small-scale chicken farms in the Vietnamese Mekong Delta from 2016 to 2019. A baseline was established before providing farms (n=102) with veterinary advice on chicken health and husbandry, and antimicrobial replacement products. Thirty-five (34.2%) farms entered the intervention phase; the remainder no longer continued raising chickens. The intervention reduced AMU (-66%) (hazard ratio [HR]=0.34; p=0.002) (baseline 343.4 Animal Daily Doses per 1,000 chicken-days) and mortality (-40%) (HR=0.60; p=0.005) (weekly baseline 1.60 per 100). Chicken bodyweight increased by 100g (p=0.002) in intervention flocks. Our findings demonstrate that in the Vietnamese context, AMU can be substantially reduced in small-scale chicken farms without compromising flock health by providing veterinary advice.

microbiology↗

bioRxiv2019

Clamping, bending, and twisting inter-domain motions in the misfold-recognising portion of UDP glucose:glycoprotein glucosyl-transferase.

UDP-glucose:glycoprotein glucosyltransferase (UGGT) is the only known glycoprotein folding quality control checkpoint in the eukaryotic glycoprotein secretory pathway. When the enzyme detects a misfolded glycoprotein in the Endoplasmic Reticulum (ER), it dispatches it for ER retention by re-glucosylating it on one of its N-linked glycans. Recent crystal structures of a fungal UGGT have suggested the enzyme is conformationally mobile. Here, a negative stain electron microscopy reconstruction of UGGT in complex with a monoclonal antibody confirms that the misfold-sensing N-terminal portion of UGGT and its C-terminal catalytic domain are tightly associated. Molecular Dynamics (MD) simulations capture UGGT in so far unobserved conformational states, giving new insights into the molecules flexibility. Principal component analysis of the MD trajectories affords a description of UGGTs overall inter-domain motions, highlighting three types of inter-domain movements: bending, twisting and clamping. These inter-domain motions modify the accessible surface area of the enzymes central saddle, likely enabling the protein to recognize and re-glucosylate substrates of different sizes and shapes, and/or re-glucosylate N-linked glycans situated at variable distances from the site of misfold. We propose to name "Parodi limit" the maximum distance between a site of misfolding on a UGGT glycoprotein substrate and an N-linked glycan that monomeric UGGT can re-glucosylate on the same glycoprotein. MD simulations estimate the Parodi limit to be around 60-70 [A]. Re-glucosylation assays using UGGT deletion mutants suggest that the TRXL2 domain is necessary for activity against urea-misfolded bovine thyroglobulin. Taken together, our findings support a "one-size-fits-all adjustable spanner" substrate recognition model, with a crucial role for the TRXL2 domain in the recruitment of misfolded substrates to the enzymes active site.

biochemistry↗