Search bioRxiv⌕ Search

Biology subjects

Rubene, D.

Publications and source records attributed to Rubene, D..

2 recordsLinked to original sources

Soil seed bank richness, abundance and density across spatial scales and global biomes

Soil seed banks are an important component of plant population and community dynamics, buffering temporal heterogeneity and allowing populations to recover following disturbance. At the same time, patterns in soil seed banks are likely to reflect scale-dependent patterns in above-ground vegetation, patterns that differ strongly across world regions. Here, we investigate components of diversity in the soil seed bank across global biomes and ecosystems. We found that patterns of species richness in the soil seed bank diverged from patterns of seed density, although there were high levels of uncertainty, especially at smaller spatial scales. Importantly, habitat degradation consistently led to lower richness, potentially limiting future ecosystem recovery. Among ecosystems, mediterranean and tropical regions had high species richness, but seed density m-2 in the soil was highest in wetlands and arable systems. Lower seed densities were found in both high-diversity tropical biomes that are characterised by short-lived seeds, and low-diversity boreal and tundra biomes with more stable established vegetation. Our findings of divergences between species richness and seed density across global biomes, and how they are impacted by habitat degradation, give valuable insights to the understanding of plant biodiversity worldwide.

ecology↗

Bacteriophage-derived dsRNA exerts anti-SARS-CoV-2 activity in vitro and in Golden Syrian hamsters in vivo

PurposeBacteriophage-derived dsRNA, also known as Larifan, is nationally well-known broad-spectrum antiviral medication. The goal of this study was to ascertain the antiviral activity of Larifan against the novel SARS-CoV-2. MethodsThe antiviral activity of Larifan against SARS-CoV-2 in vitro was measured in human lung adenocarcinoma (Calu3) and primary human small airway epithelial cells (HSAEC) using cytopathic effect assay, viral RNA copy number detection by digital droplet PCR (ddPCR) and infectious virus titration in cells supernatants in Vero E6 cells by end-point titration method. The antiviral effect of Larifan in vivo was detected in SARS-CoV-2 infection model in Golden Syrian hamsters. Larifan (5 mg/kg) was administered either subcutaneously or intranasally twice before and after virus infection with a 24-hour interval between doses. The viral RNA copies and infectious virus titre were detected in animal lungs at day three and five post-infection using ddPCR and end-point titration in Vero E6 cells, respectively. Histopathology of lungs was analysed as well. ResultsLarifan inhibited SARS-CoV-2 replication in Calu3 cells both after the drug addition pre- and post-infection with a substantial drop in the supernatant viral RNA copy numbers from eight (p = 0.0013) to twenty (p = 0.0042) times, respectively. Similarly, infectious virus titre in Vero E6 cells dropped by 3.6log10 TCID50 and 2.8log10 TCID50 after the drug addition pre- and post-infection, respectively. In HSAEC, Larifan inhibited SARS-CoV-2 replication at the similar level. Larifan also markedly reduced virus numbers in the lungs of infected hamsters (p = 0.0032) both at day three and five post-infection with a more pronounced effect after intranasal administration reaching a drop by 2.7log10 at day three and 2.0log10 at day five. The administration of Larifan also reduced the amount of infections virus titer in lungs (p = 0.0039) by 4.3log10 TCID50 and 2.8log10 TCID50 at day three and five post-infection, respectively. Improvements in the infection-induced pathological lesion severity in the lungs of animals treated with Larifan were also demonstrated by histological analyses. ConclusionsThe inhibition of SARS-CoV-2 replication in vitro and the reduction of the viral load in the lungs of infected hamsters treated with Larifan alongside the improved lung histopathology, suggests a potential use of Larifan in controlling the COVID-19 disease in humans.

microbiology↗