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Biology subjects

Ross, A. C.

Publications and source records attributed to Ross, A. C..

3 recordsLinked to original sources

Characterization of a novel fatty acid-modifying pathway toward the biosynthesis of tambjamine BE-18591 in Streptomyces

Tambjamines are a class of bacterial bipyrrolic natural products with potent biological activity. Recently, the first Actinomycete biosynthetic gene cluster (BGC) responsible for the production of a tambjamine (BE-18591) was discovered in Streptomyces albus, and bioinformatic analysis suggested the alkylamine tail component is constructed using disparate biosynthetic logic than employed by Proteobacteria to assemble structurally similar tambjamines YP1 and MYP1. Here, we report the experimental characterization of four novel streptomycete proteins and demonstrate that these enable the unique, late-stage assembly of the alkylamine component of BE-18951. Specifically, a fatty acyl-carrier protein (TabQ) is loaded with a 12-carbon acyl chain, selected for, in part, through the action of an editing type II thioesterase (TabJ). The resulting C12-TabQ adduct is then processed to an aldehyde by a novel acyl-ACP reductase (TabE) that harbors none of the telltale amino acid signatures that typically identify these proteins. The resulting aldehyde is finally converted to the amine by an{omega} -transaminase (TabA) that demonstrates some degree of promiscuity. These four proteins encoded by the BE-18591 BGC in Streptomyces albus enable the assembly of the fatty amine that is ultimately incorporated into the tambjamine. Our findings highlight the disparate chemical logic employed by Proteo- and Actinobacteria for the biosynthesis of the alkylamine components of tambjamine natural products.

biochemistry↗

A functional single nucleotide polymorphism upstream of the collagen type III gene may contribute to catastrophic fracture risk in Thoroughbred horses.

Fractures caused by bone overloading are a leading cause of euthanasia in Thoroughbred racehorses. The risk of fatal fracture has been shown to be influenced by both environmental and genetic factors but, to date, no specific genetic mechanisms underpinning fracture have been identified. The aim of this study was to utilise a genome-wide polygenic risk score to establish an in vitro cell system to study bone gene regulation in horses at high and low genetic risk of fracture. Candidate gene expression analysis revealed differential expression of COL3A1 and STAT1 genes in osteoblasts derived from high and low risk horses. Whole genome sequencing of fracture case and control horses revealed a single nucleotide polymorphism (SNP) upstream of COL3A1 that was confirmed in a larger cohort to be significantly associated with fracture. Bioinformatics tools predicted that this SNP may impact the binding of the transcription factor SOX11. Gene modulation demonstrated SOX11 is upstream of COL3A1 and the region binds to nuclear proteins. Furthermore, luciferase assays demonstrated that the region containing the SNP has promoter activity. However, the specific effect of the SNP depends on the broader genetic background of the cells and suggest other factors may also be involved in regulating COL3A1 expression. In conclusion, this approach provides a powerful means to identify novel DNA variants and understand their mechanism of action to enable the development of new ways to identify and treat horses at high risk of a catastrophic fracture.

genetics↗

Avant-garde assembly-line biosynthesis expands diversity of cyclic lipodepsipeptide products

Modular nonribosomal peptide synthetase (NRPS) and polyketide synthase (PKS) enzymatic assembly lines are large and dynamic protein machines that generally undergo a linear progression of catalytic cycles via a series of enzymatic domains organized into independent modules. Here we report the heterologous reconstitution and comprehensive characterization of two hybrid NRPS-PKS assembly lines that defy many standard rules of assembly-line biosynthesis to generate a large combinatorial library of cyclic lipodepsipeptide protease inhibitors called thalassospiramides. We generate a series of precise domain-inactivating mutations in thalassospiramide assembly lines and present compelling evidence for an unprecedented biosynthetic model that invokes inter-module substrate activation and tailoring, module skipping, and pass-back chain extension, whereby the ability to pass the growing chain back to a preceding module is flexible and substrate-driven. Expanding bidirectional inter-module domain interactions could represent a viable mechanism for generating chemical diversity without increasing the size of biosynthetic assembly lines and raises new questions regarding our understanding of the structural features of multi-modular megaenzymes.

molecular biology↗