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Roshandel, D.

Publications and source records attributed to Roshandel, D..

2 recordsLinked to original sources

Accelerated Limbal Epithelial Differentiation of Human Induced Pluripotent Stem Cells Using a Defined Keratinocyte Serum-Free Medium

PurposeTreatment of bilateral limbal stem cell deficiency (LSCD) is challenging due to the limited autologous stem cell sources. This study aimed to differentiate human induced pluripotent stem cells (hiPSCs) into limbal epithelial stem cells (LESCs) using a defined keratinocyte serum-free medium (DKSFM). MethodsA fully characterized hiPSC line was committed to ectodermal differentiation using Essential 6 (E6) medium supplemented with 10 {micro}M Y-27632 (Day 1), 10 {micro}M SB-505124 plus 50 ng/ml bFGF (Day 2) and 25 ng/ml BMP-4 (Days 3 and 4). Differentiation was continued in DKSFM for an additional 21 days. Quantitative PCR (qPCR) and/or immunocytochemistry (ICC) for pluripotency, proliferation, LESC, and corneal epithelial markers were performed on samples collected at days 5, 10, 15, and 25 (D5 to D25) and compared with undifferentiated hiPSCs (UD). ResultsqPCR revealed a significant decrease in the expression of OCT4 and NANOG and a significant increase in ABCG2 and TP63 following ectodermal induction (i.e., D5), compared with UD (P < 0.05). The expression levels of Ki67, ABCG2, TP63, and CK14 were significantly higher at D10, compared with D5 and D25 (P < 0.05). The ratio of p63-positive cells was 71% and 56% in D10 and D15 cells, respectively (P < 0.05). DiscussionOur method resulted in a limited but rapid differentiation of hiPSCs into LESC-like cells. The LESC-like cells appeared as early as 5 days following ectodermal induction and their population peaked after 10 days. Upon further optimization and validation, DKSFM can be used for rapid limbal epithelial differentiation of hiPSCs.

bioengineering↗

RegionScan: A comprehensive R package for region-level genome-wide association testing with integration and visualization of multiple-variant and single-variant hypothesis testing

SummaryRegionScan is an R package for comprehensive and scalable genome-wide association testing of region-level multiple-variant and single-variant statistics and visualization of the results. It implements various state-of-the-art region-level tests to improve signal detection under heterogeneous genetic architectures and facilitates comparison of multiple-variant region-level and single-variant test results. It exploits local linkage disequilibrium (LD) structure for genomic partitioning and LD-adaptive region definition. RegionScan is compatible with VCF input file formats for genotyped and imputed variants, and options are available for analysis of multi-allelic variants and unbalanced binary phenotypes. It accommodates parallel region-level processing and analysis to improve computational time and memory efficiency and provides detailed outputs and utility functions to assist results comparison, visualization, and interpretation. Availability and implementationRegionScan is freely available for download on GitHub (https://github.com/brossardMyriam/RegionScan). Contactbull@lunenfeld.ca, brossard@lunenfeld.ca. Supplementary informationSupplementary data are available at Bioinformatics online.

genetics↗