Biology subjects

Rose, R. J.

Publications and source records attributed to Rose, R. J..

5 recordsLinked to original sources

bioRxiv2023

Proteomic insights into mental health status: plasma markers in young adults

Global emphasis on enhancing prevention and treatment strategies necessitates increased understanding of biological mechanisms of psychopathology. Plasma proteomics is a powerful tool that has been applied in the context of specific mental disorders for biomarker identification. The p-factor, also known as the "general psychopathology factor", is a concept in psychopathology suggesting that there is a common underlying factor that contributes to the development of various forms of mental disorders. It has been proposed that the p-factor can be used to understand the overall mental health status of an individual. Here we aimed to discover plasma proteins associated with the p-factor in 775 young adults in the FinnTwin12 cohort. Using liquid chromatography-tandem mass spectrometry, 14 proteins with a significant connection with the p-factor were identified, 9 of which were linked to epidermal growth factor receptor (EGFR) signalling. This exploratory study provides new insight into biological alterations associated with mental health status in young adults.

neuroscience↗

bioRxiv2023

Evaluating the mouse neural precursor line, SN4741, as a suitable proxy for midbrain dopaminergic neurons

To overcome the ethical and technical limitations of in vivo human disease models, the broader scientific community frequently employs model organism-derived cell lines to investigate of disease mechanisms, pathways, and therapeutic strategies. Despite the widespread use of certain in vitro models, many still lack contemporary genomic analysis supporting their use as a proxy for the affected human cells and tissues. Consequently, it is imperative to determine how accurately and effectively any proposed biological surrogate may reflect the biological processes it is assumed to model. One such cellular surrogate of human disease is the established mouse neural precursor cell line, SN4741, which has been used to elucidate mechanisms of neurotoxicity in Parkinson disease for over 25 years. Here, we are using a combination of classic and contemporary genomic techniques - karyotyping, RT-qPCR, single cell RNA-seq, bulk RNA-seq, and ATAC-seq - to characterize the transcriptional landscape, chromatin landscape, and genomic architecture of this cell line, and evaluate its suitability as a proxy for midbrain dopaminergic neurons in the study of Parkinson disease. We find that SN4741 cells possess an unstable triploidy and consistently exhibits low expression of dopaminergic neuron markers across assays, even when the cell line is shifted to the non-permissive temperature that drives differentiation. The transcriptional signatures of SN4741 cells suggest that they are maintained in an undifferentiated state at the permissive temperature and differentiate into immature neurons at the non-permissive temperature; however, they may not be dopaminergic neuron precursors, as previously suggested. Additionally, the chromatin landscapes of SN4741 cells, in both the differentiated and undifferentiated states, are not concordant with the open chromatin profiles of ex vivo, mouse E15.5 forebrain- or midbrain-derived dopaminergic neurons. Overall, our data suggest that SN4741 cells may reflect early aspects of neuronal differentiation but are likely not a suitable a proxy for dopaminergic neurons as previously thought. The implications of this study extend broadly, illuminating the need for robust biological and genomic rationale underpinning the use of in vitro models of molecular processes.

genetics↗

bioRxiv2019

Polygenic Prediction of Substance Use Disorders in Clinical and Population Samples

Genome-wide, polygenic risk scores (PRS) have emerged as a useful way to characterize genetic liability using genotypic data. There is growing evidence that PRS may prove useful to identify those at increased risk for developing certain diseases. The current utility of PRS in relation to alcohol use disorders (AUD) remains an open question. Using data from both a population-based sample [the FinnTwin12 (FT12) study] and a high risk sample [the Collaborative Study on the Genetics of Alcoholism (COGA)], we examined the association between PRSs derived from genome-wide association studies (GWASs) of 1) alcohol dependence/alcohol problems, 2) alcohol consumption, and 3) risky behaviors with AUD and other substance use disorder (SUD) symptoms. Individuals in the top 20%, 10%, and 5% of PRSs had increasingly greater odds of having an AUD compared to the lower end of the continuum in both COGA (80th % OR = 1.95; 90th % OR = 2.03; 95th % OR = 2.13) and FT12 (80th % OR = 1.77; 90th % OR = 2.27; 95th % OR = 2.39). Those in the top 5% reported greater levels of licit (alcohol and nicotine) and illicit (cannabis) SUD symptoms. PRSs can predict elevated risk for SUD in independent samples. However, clinical utility of these scores in their current form is modest. As these scores become more predictive of SUD, they may become useful to practitioners. Improvement in predictive ability will likely be dependent on increasing the size of well-phenotyped discovery samples.

genetics↗

bioRxiv2019

Polygenic risk score of alcohol consumption predicts alcohol-related morbidity and all-cause mortality

ObjectiveTo develop a highly polygenic risk score (PRS) for alcohol consumption and study whether it predicts alcohol-related morbidity and all-cause mortality.\n\nDesignBiobank-based prospective cohort study\n\nSettingFinnGen Study (Finland)\n\nParticipants96,499 genotyped participants from the nationwide prospective FinnGen study and 36,499 participants from prospective cohorts (Health 2000, FINRISK, Twin Cohort) with detailed baseline data and up to 25 years of follow-up time.\n\nMain outcome measuresIncident alcohol-related morbidity and alcohol-related or all-cause mortality, based on hospitalizations, outpatient specialist care, drug purchases, and death reports.\n\nResultsIn 96,499 FinnGen participants there were in total 4,785 first-observed incident alcohol-related health events. The PRS of alcohol consumption was associated with alcohol-related morbidity and the risk estimate (hazard ratio, HR) between the highest and lowest quintiles of the PRS was 1.67 [ 95 % confidence interval: 1.52-1.84], p=3.2*10-27). In 28,639 participants with comprehensive baseline data from prospective Health 2000 and FINRISK cohorts, 911 incident first alcohol-related events were observed. When adjusted for self-reported alcohol consumption, education, marital status, and gamma-glutamyl transferase blood levels, the risk estimate between the highest and lowest quintiles of the PRS was 1.58 (CI=[1.26-1.99], p=8.2*10-5). The PRS was also associated with all-cause mortality with a risk estimate of 1.33 between the highest and lowest quintiles (CI=[1.2-1.47], p=4.5e-08) in the adjusted model. In all 39,695 participants with self-reported alcohol consumption available, a 1 SD increase in the PRS was associated with 11.2 g (=0.93 drinks) higher weekly alcohol consumption ({beta}=11.2 [9.85-12.58 g], p = 2.3*10-58).\n\nConclusionsThe PRS for alcohol consumption associates for both alcohol-related morbidity and all-cause mortality. These findings underline the importance of heritable factors in alcohol-related behavior and the related health burden. The results highlight how measured genetic risk for an important behavioral risk factor can be used to predict related health outcomes.

genomics↗

bioRxiv2019

Polygenic Risk for Alcohol Misuse is Moderated by Romantic Partnerships: Primarily in Men

ImportanceProblematic alcohol use remains a leading influence on preventable mortality and morbidity across the globe. Those in committed relationships consistently report lower levels of alcohol misuse and problems. ObjectiveTo determine 1) whether genetic risk for alcohol misuse is moderated by romantic relationships (gene-environment interaction; GxE), and 2) whether GxE results are consistent across sex. DesignData came from the young adult wave of the Finnish Twin Study (FinnTwin12), a nationally representative sample of twins. Predictors included genome-wide polygenic scores (GPS), derived from a recent genome-wide association study (GWAS) of alcohol consumption in ~1 million participants; and participant reports of relationship status. SettingFinland ParticipantsAn intensively studied subset of FinnTwin12 received a diagnostic interview during the young adult phase (1,312 of 1,347 individuals provided genotypic data). The analytic sample includes those with complete interview and genetic data (N=1,201, 54% female). ExposureSelf-reported involvement in a romantic partnership. Main Outcomes and MeasuresDrinking frequency, intoxication frequency, and DSM-IV alcohol dependence (AD) symptoms from a diagnostic interview. ResultsGPS predicted drinking frequency (b = 0.109; 95% CI = 0.051, 0.167), intoxication frequency (b = 0.111; 95% CI = 0.054, 0.168), and AD symptoms (b = 0.123; 95% CI = 0.064, 0.182). Relationship moderated the association between GPS and drinking frequency (b = -0.105; 95% CI = -0.211, -0.001), intoxication frequency (b = -0.118; 95% CI = -0.220, -0.015), and AD symptoms (b = -0.119; 95% CI = -0.229, -0.010). The interaction for drinking frequency was not significant after correcting for covariates. There was a 3-way interaction between sex, relationship status, and GPS for intoxication frequency (b = 0.223; 95% CI = 0.014, 0.432), with the two-way interaction of relationship status and PRS on intoxication frequency being significant only in men. Conclusions and RelevanceBeing in a relationship reduced the association between genetic predisposition and high risk drinking. Part of the protective effect of committed partnerships on alcohol misuse observed in epidemiological research may be in limiting genetic liability. However, this protective effect was largely limited to males, mapping onto earlier findings suggesting that males benefit more from romantic partnerships. Key PointsO_ST_ABSQuestionC_ST_ABSDo romantic relationships moderate polygenic risk on alcohol misuse in young adulthood? FindingsInvolvement in romantic relationships moderated the polygenic risk on frequency of intoxication and DSM-IV alcohol dependence symptoms, such that polygenic associations with alcohol misuse were stronger among those not in a romantic relationship. Males experienced a stronger protective effect of romantic relationship in limiting the manifestation of genetic predispositions toward intoxication frequency. MeaningThe interplay between genes and environment is important in understanding etiology of problematic alcohol use, and romantic relationships appear to buffer genetic risk for alcohol misuse in young adulthood. Findings underscore how social relationships may alter the risk posed by genetic predispositions.

epidemiology↗