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Biology subjects

Roos, F. J. M.

Publications and source records attributed to Roos, F. J. M..

2 recordsLinked to original sources

Mechanical signalling through collagen I regulates cholangiocyte specification and tubulogenesis during liver development

Cholangiocyte dysfunction accounts for a third of liver transplantations, access to which is limited by a shortage of healthy donor organs. A promising alternative is the therapeutic use of human induced pluripotent stem cell (hiPSC)-derived cholangiocytes. However, the use of hiPSCs is impeded by a lack of knowledge regarding intrahepatic cholangiocyte development, limiting the generation of fully functional cells. In this study, we generate hiPSC-derived tubular cholangiocytes using an approach based in synthetic hydrogels. These hydrogels exert control over stiffness and extracellular matrix (ECM) composition and stability, allowing us to address a critical gap in understanding cholangiocyte development. Our findings reveal that stable collagen I functionalisation, particularly on a soft substrate, enhances cholangiocyte differentiation, largely irrespective of substrate stiffness. Furthermore, high collagen I stability on a soft substrate suppresses hepatic identity whilst promoting biliary identity and duct morphogenesis. Our findings highlight the importance of collagen I mechanical signalling in regulating hepatoblast fate determination. Overall, we propose a mechanism by which the ECM modulates cholangiocyte and bile duct development and present a scalable platform for future clinical applications in the understanding and treatment of cholangiopathies.

developmental biology↗

Integrative omics analysis reveals gene regulatory mechanisms distinguishing organoid-derived hepatocytes from primary human hepatocytes

Background and AimsHepatic organoid cultures are considered a powerful model system to study liver development and diseases in vitro. However, hepatocyte-like cells differentiated from such organoids remain immature compared to primary human hepatocytes. Therefore, a comprehensive understanding of differences in gene regulatory mechanisms between primary human hepatocytes and hepatic organoids is essential to obtain functional hepatocyte-like cells in vitro for fundamental and therapeutic applications. MethodsWe obtained primary human hepatocytes at high purity from all zones of the liver lobule using an optimized two-step perfusion protocol. We captured the single-cell transcriptome and chromatin accessibility landscape using scRNA-seq and ATAC-seq, respectively. We identified key transcription factors and compared the gene regulatory mechanisms in primary human hepatocytes and (un)differentiated intrahepatic cholangiocyte organoids. Using siRNA-mediated perturbations, we showed the functional relevance of an organoid-enriched transcription factor during in vitro differentiation of hepatocyte-like cells. ResultsOur integrative omics analysis revealed that Activator Protein 1 (AP-1) family members cooperate with hepatocyte-specific transcription factors, including HNF4A, in maintaining cellular functionality of mature human hepatocytes. Comparative analysis identified distinct transcription factor sets specifically active in human hepatocytes and organoids. Amongst these ELF3 is unique to intrahepatic cholangiocyte organoids and its expression level negatively correlate with expression of hepatic marker genes. Functional analysis of ELF3 furthermore revealed that ELF3 depletion optimizes the formation of hepatocyte-like cells from intrahepatic cholangiocyte organoids. ConclusionsCollectively, our integrative analysis provides insights into the transcriptional regulatory networks of human hepatocytes and hepatic organoids, thereby informing future strategies for better establishment of urgently-needed hepatic model systems in vitro.

molecular biology↗