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Rohrs, J. A.

Publications and source records attributed to Rohrs, J. A..

3 recordsLinked to original sources

ERK activation in CAR T cells is amplified by CD28-mediated increase in CD3ζ phosphorylation

Chimeric antigen receptors (CARs) are engineered receptors that mediate T cell activation. CARs are comprised of activating and costimulatory intracellular signaling domains derived from endogenous T cells that initiate signaling required for T cell activation, including ERK activation through the MAPK pathway. Understanding the mechanisms by which co-stimulatory domains influence signaling can help guide the design of next-generation CARs. Therefore, we constructed an experimentally-validated computational model of anti-CD19 CARs in T cells bearing the CD3{zeta} domain alone or in combination with CD28. We used ensemble modeling to explore different mechanisms of CD28 co-stimulation on the ERK response time. Model simulations show that CD28 primarily influences ERK activation by enhancing the phosphorylation kinetics of CD3{zeta}, predictions that are validated by experimental measurements. Overall, we present a mechanistic mathematical modeling framework that can be used to gain insights into the mechanism of CAR T cell activation and produce new testable hypotheses.

systems biology↗

Constructing predictive cancer systems biology models

Systems biology combines computational modeling with quantitative experimental measurements to study complex biological processes. Here, we outline an approach for parameterizing and validating a systems biology model to yield predictive tool that can generate testable hypotheses and expand biological understanding.

systems biology↗

Computational model of chimeric antigen receptors explains site-specific phosphorylation kinetics

Chimeric antigen receptors (CARs) have recently been approved for the treatment of hematological malignancies, but our lack of understanding of the basic mechanisms that activate these proteins has made it difficult to optimize and control CAR-based therapies. In this study, we use phospho-proteomic mass spectrometry and mechanistic computational modeling to quantify the in vitro kinetics of individual tyrosine phosphorylation on a variety of CARs. We show that each of the ten tyrosine sites on the CD28-CD3{zeta} CAR is phosphorylated by LCK with distinct kinetics. The addition of CD28 at the N-terminal of CD3{zeta} increases the overall rate of CD3{zeta} phosphorylation. Our computational model identifies that LCK phosphorylates CD3{zeta} through a mechanism of competitive inhibition. This model agrees with previously published data in the literature and predicts that phosphatases in this system interact with CD3{zeta} through a similar mechanism of competitive inhibition. This quantitative modeling framework can be used to better understand CAR signaling and T cell activation.

systems biology↗