Biology subjects

Rodrigues, M. T.

Publications and source records attributed to Rodrigues, M. T..

4 recordsLinked to original sources

bioRxiv2025

Demographic history explains mitochondrial genome capture and mitonuclear discordance among South American collared Tropidurus lizards

Mitonuclear discordance--evolutionary discrepancies between mitochondrial and nuclear DNA phylogenies--can arise from various factors, including introgression, incomplete lineage sorting, recent or ancient demographic fluctuations, sex-biased dispersal asymmetries, among others. Understanding this phenomenon is crucial for accurately reconstructing evolutionary histories, as failing to account for discordance can lead to misinterpretations of species boundaries, phylogenetic relationships, and historical biogeographic patterns. We investigate the evolutionary drivers of mitonuclear discordance in the Tropidurus spinulosus species group, which contains nine species of lizards inhabiting open tropical and subtropical environments in South America. Using a combination of population genetic and phylogenomic approaches applied to mitochondrial and nuclear data, we identified different instances of gene flow that occurred in ancestral lineages of extant species. Our results point to a complex evolutionary history marked by prolonged isolation between species, demographic fluctuations, and potential episodes of secondary contact with genetic admixture. These conditions likely facilitated mitochondrial genome capture while diluting signals of nuclear introgression. Furthermore, we found no strong evidence supporting incomplete lineage sorting or natural selection as primary drivers of the observed mitonuclear discordance. Therefore, the unveiled patterns are most consistent with neutral demographic processes, coupled with ancient mitochondrial introgression, as the main factors underlying the mismatch between nuclear and mitochondrial phylogenies in this system. Future research could further explore the role of other demographic processes, such as asymmetric sex-biased dispersal, in shaping these complex evolutionary patterns.

genomics↗

bioRxiv2021

Does heat tolerance actually predict geographic thermal limits of animal species?

To understand species' climatic vulnerability, our measures of species thermal tolerance should predict their geographic thermal limits. Yet, this assumption is ungranted. We tested if animals' heat tolerance restrict the warmest temperatures they can live at (Tmax), distinguishing among species differently challenged by their thermal environment. For that, we compiled 2350 measurements of species heat tolerance indexes and corresponding Tmax, measured at different microhabitats. We show that reptiles, a flagship for climatic vulnerability studies, are particularly unbounded by their heat tolerance. Contrarily, tolerance restricted marine fish geography in a non-linear fashion which contrasts with terrestrial taxa. Behavioral tolerance indexes, widely used to predict vulnerability, predicted Tmax inconsistently across Tmax indexes, or were inversely related to it. Animals heat tolerance restricts geographic limits more strongly for more thermally challenged species. In turn, factors uncoupling heat tolerance and Tmax (plasticity, thermoregulation, adaptation) should be more important for less thermally challenged species. Significance StatementTo identify climatic vulnerability, heat tolerance indices need to predict species' thermal limits to geographic distribution. Yet, we show that heat tolerance predicts geographic limits quite heterogeneously, depending on taxa, the type of measure of heat tolerance and how challenged are species at their hottest known location. Particularly, reptiles, a flagship of vulnerability studies, were less bounded by tolerance than taxa regarded as more capable to evade high temperatures, due to their capacity to evaporate water, find refuge, or migrate (Ex. amphibians, arthropods, birds and mammals). Measures of species behavioral heat tolerance may still need to improve. Factors thought to uncouple thermal tolerance and geographic limits should be stronger for less thermally challenged species.

ecology↗

bioRxiv2020

Evolutionary drivers of polymorphic sexual signals in slender anoles

Phenotypic variation among populations, as seen in the signaling traits of many species, provides an opportunity to test whether similar factors generate shared phenotypic patterns in different parts of a species range. We investigate whether genetic divergence, abiotic gradients, and sympatry with closely related species explain variation in the dewlap colors of slender anoles, Anolis fuscoauratus. To this aim, we characterized dewlap diversity in the field, inferred population genetic structure and evolutionary relationships, assessed whether dewlap morphs are associated with climate and landscape variables, and tested for non-random associations in the distribution of A. fuscoauratus morphs and sympatric Anolis species. We found that dewlap colors vary among but not within sites in A. fuscoauratus. Regional genetic clusters included multiple morphs, while populations with similar dewlaps were often distantly related. Morphs did not segregate in environmental space, suggesting that dewlaps are not locally adapted to abiotic factors. Instead, we found a negative association between certain morphs and Anolis species with similar relative dewlap brightness, suggesting that interactions with closely related species promoted dewlap divergence among A. fuscoauratus populations. Slender anoles emerge as a promising system to address questions about parallel trait evolution and the contribution of signaling traits to speciation.

evolutionary biology↗

bioRxiv2017

Phenotype loss is associated with widespread divergence of the gene regulatory landscape in evolution

Detecting the genomic changes underlying phenotypic changes between species is a main goal of evolutionary biology and genomics. Evolutionary theory predicts that changes in cis-regulatory elements are important for morphological changes. Here, we combine genome sequencing and functional genomics with genome-wide comparative analyses to investigate the fate of regulatory elements in lineages that lost morphological traits. We first show that limb loss in snakes is associated with widespread divergence of limb regulatory elements. We next show that eye degeneration in subterranean mammals is associated with widespread divergence of eye regulatory elements. In both cases, sequence divergence results in an extensive loss of relevant transcription factor binding sites. Importantly, diverged regulatory elements are associated with key genes required for normal limb patterning or normal eye development and function, suggesting that regulatory divergence contributed to the loss of these phenotypes. Together, our results provide the first evidence that genome-wide decay of the phenotype-specific cis-regulatory landscape is a hallmark of lost morphological traits.

genomics↗