Biology subjects

Robinson, C. D.

Publications and source records attributed to Robinson, C. D..

5 recordsLinked to original sources

bioRxiv2025

The Effect of Plasma Activated Water on the Rhizosphere Composition of Arabidopsis and Solanum lycopersicum

The emerging field of plasma agriculture investigates the potential benefit of non-thermal plasma (NTP) for agricultural practices. NTP-treated water, referred to as plasma activated water (PAW), has been proposed as a sustainable alternative to conventional nitrogen (N) fertilizers. Growing demand for N fertilizer is concomitant with increased global food demands. PAW contains nitrate (NO3-) and reactive oxygen species, such as hydrogen peroxide (H2O2), which are fixed from atmospheric molecules via NTP. While early studies report positive effects of PAW on plant growth, its influence on plant-associated microbial communities remains poorly understood. Here, we compared the impacts of PAW or NO3- solutions on the rhizosphere microbial community of Arabidopsis thaliana and Solanum lycopersicum. PAW was generated by a radio frequency (RF) glow discharge plasma source and contained no measurable ROS, while the control solution contained an equivalent concentration of NO3-. No significant differences in alpha diversity were detected in either plant species microbiome after 5 weeks of treatment when grown in non-commercial potting substrate. Significant dissimilarity was found in terms of beta diversity, but the relative abundance of the sequenced genera suggested no functional differences in rhizosphere communities. Overall, PAW treatment did not adversely impact the rhizosphere microbiome in either Arabidopsis or tomato. These results support the use of PAW as an alternative N-fertilizer, though outcomes may differ for PAW solutions containing ROS.

plant biology↗

bioRxiv2025

Widespread male-female expression imbalance of X-linked genes across phrynosomatid lizards

Classic theory on sex chromosome evolution predicts that selection should restore ancestral diploid expression for hemizygous X-linked genes in males. However, this dosage compensation is often incomplete, leaving X enriched for genes with female-biased expression. In this context, iguanian lizards are noteworthy among vertebrates because several species from separate families appear to exhibit both near-complete dosage compensation and male-female expression balance across their ancient, homologous X chromosomes. We tested for this pattern in a phrynosomatid iguanian, Sceloporus undulatus (Eastern Fence Lizard), and instead found that both ancient and more recently sex-linked regions of the X chromosome are enriched for genes with female-biased expression, regardless of age (neonate, maturing, adult) or tissue (brain, liver, muscle). By expanding our analysis across 10 phrynosomatid species spanning 4 genera, we found that male-female expression imbalance on the ancestral region of X is phylogenetically conserved. We also found that an inferred chromosomal rearrangement in the S. jarrovii lineage has resulted in the novel acquisition of female-biased expression by a formerly autosomal region. Whereas sex-biased expression of the ancestral region of X is primarily due to females overexpressing X-linked genes relative to autosomal genes, sex-biased expression of these formerly autosomal genes in S. jarrovii is primarily due to males underexpressing this putative neo-X region. We conclude that male-female expression imbalance on X is widespread across phrynosomatids, potentially reflecting both overexpression in females for ancestral regions that have evolved dosage compensation and underexpression in males for neo-X regions in which dosage compensation has yet to evolve.

evolutionary biology↗

bioRxiv2025

Non-Thermal Plasma Activated Water is an Effective Nitrogen Fertilizer Alternative for Arabidopsis thaliana

Nitrogen (N) fixation with non-thermal plasmas has been proposed as a sustainable alternative to meet growing N fertilizer demands for agriculture. This technology generates Plasma Activated Water (PAW) with a range of chemical compositions, including different concentrations of nitrate (NO-) and hydrogen peroxide (H2O2), among other compounds. Potential use of PAW as an effective crop fertilizer necessitates a robust understanding of the underlying biology of the plant, which is not yet available. The lack of a unified standard in PAW production and the varying chemical make-up that results from different devices and protocols hampers comparative studies and adoption of this technology. The objective of this study was to compare the efficacy of two PAW solutions with differing concentrations of H2O2 produced from a Radio Frequency (RF) glow discharge plasma source. The effect of these solutions on plant growth, ROS accumulation, gene expression and heat stress response were compared to N-equivalent controls in the model plant Arabidopsis to assess their potential as an alternative N fertilizer. While PAW solutions lacking detectable H2O2 enhanced seedling growth, those containing approximately 0.3 {micro}M of H2O2 did not. ROS accumulation in root tissues was similar between PAW and chemically equivalent solutions, suggesting H2O2 is the primary ROS present in the PAW at the time of treatment. Gene expression studies showed induction of genes involved in N uptake and assimilation in PAW-treated seedlings. Pre- treatment of seedlings with PAW solutions containing H2O2 improved root growth under heat stress which indicates that this treatment may induce plant stress response pathways. Finally, mature plants showed similar growth when fertilized with PAW lacking H2O2 or NO3- control regimes for over 5 weeks indicating equivalency in chemical composition, plant nutrient uptake and utilization. Overall, these results demonstrate that PAW is an effective alternative to NO3- fertilizers for plant cultivation but the levels of H2O2 need to be carefully controlled.

plant biology↗

bioRxiv2023

Behavioral estimates of mating success corroborate genetic evidence for pre-copulatory sexual selection in male Anolis sagrei lizards

In promiscuous species, fitness estimates obtained from genetic parentage may often reflect both pre- and post-copulatory components of sexual selection. Directly observing copulations can help isolate the role of pre-copulatory selection, but such behavioral data are difficult to obtain in the wild and may also overlook post-copulatory factors that alter the relationship between mating success and reproductive success. To overcome these limitations, we combined genetic parentage analysis with behavioral estimates of size-specific mating in a wild population of brown anole lizards (Anolis sagrei). Males of this species are twice as large as females and multiple mating among females is common, suggesting the scope for both pre- and post-copulatory processes to shape sexual selection on male body size. Our genetic estimates of reproductive success revealed strong positive directional selection for male size, which was also strongly associated with the number of mates inferred from parentage. In contrast, a males size was not associated with the fecundity of his mates or his competitive fertilization success. By simultaneously tracking copulations in the wild via the transfer of colored powder to females by males from different size quartiles, we independently confirmed that large males were more likely than small males to mate. We conclude that body size is primarily under pre-copulatory sexual selection in brown anoles, and that post-copulatory processes do not substantially alter this pre-copulatory selection. Our study also illustrates the utility of combining both behavioral and genetic methods to estimate mating success to disentangle pre- and post-copulatory processes in promiscuous species.

evolutionary biology↗

bioRxiv2020

Phenotypic parallelism during experimental adaptation of a free-living bacterium to the zebrafish gut

Despite the fact that animals encounter a plethora of bacterial species throughout their lives, only a subset are capable of colonizing vertebrate digestive tracts, and these bacteria can profoundly influence the health and development of their animal hosts. However, it is still unknown how bacteria evolve symbioses with animal hosts, and this process is central to both the assembly and function of gut bacterial communities. Therefore, we used experimental evolution to study a free-living bacterium as it adapts to a novel vertebrate host. We serially passaged replicate populations of Shewanella oneidensis, through the digestive tracts of larval zebrafish (Danio rerio). After only 20 passages, representing approximately 200 bacterial generations, isolates from replicate evolved populations displayed an improved ability to colonize larval zebrafish digestive tracts during competition against their unpassaged ancestor. Upon sequencing the genomes of these evolved isolates, we discovered that the two isolates with the highest mean competitive fitness accumulated unique sets of mutations. We characterized the swimming motility and aggregation behavior of these isolates, as these phenotypes have previously been shown to alter host-microbe interactions. Despite exhibiting different biofilm characteristics, both isolates evolved augmented swimming motility. These enhancements are consistent with expectations based on the behavior of a closely related Shewanella strain previously isolated from the zebrafish digestive tract and suggest that our evolved isolates are pursuing a convergent adaptive trajectory with this zebrafish isolate. In addition, parallel enhancements in swimming motility among isolates from independently adapted populations implicates increased dispersal as an important factor in facilitating the onset of host association. Our results demonstrate that free-living bacteria can rapidly improve their associations with vertebrate hosts.

evolutionary biology↗