Biology subjects

Robertson, B. C.

Publications and source records attributed to Robertson, B. C..

6 recordsLinked to original sources

bioRxiv2026

Elevated recessive lethal frequencies drive hatching failure following near extinction in 'Alala, the Hawaiian crow

Near-extinction events impose severe genomic bottlenecks that can have lasting fitness consequences, yet the specific mechanisms involved remain poorly understood. Alal[a], the last remaining Hawaiian crow, narrowly avoided extinction when a conservation breeding program was initiated from just eight genetic founders. Although the conservation breeding program has since recovered to [~]120 birds, it remains plagued by egg hatching failure rates >50%. To investigate the impacts of this bottleneck on hatching failure and other fitness components, we generated a chromosome-level reference genome and resequenced 175 individuals, including 78 deceased embryos. Although long runs of homozygosity (ROH) >1Mb are abundant in Alal[a] (mean FROH=0.32), associations between FROH and measures of survival and reproduction, including egg failure, were weak or nonexistent. Instead, we identify two recessive lethal haplotypes that together account for nearly all of the excess hatching failure and have persisted in the population at high frequency (15-25%), hinting at impaired purifying selection. Eco-evolutionary simulation models demonstrate that these findings are expected for a species that has endured a severe population bottleneck and exhibits modest levels of pre-bottleneck heterozygosity. Our findings suggest that elevated recessive allele frequencies may be a broadly important consequence of population bottlenecks.

evolutionary biology↗

bioRxiv2026

Transmission strategy modulates parasite biogeography in an island-colonising bird

Parasites occur in every ecosystem, although their dispersal is often constrained by the availability of hosts or vectors. Here, we explore how variation in parasite life history traits, particularly transmission strategy, may influence their distributions. Specifically, we test whether a variety of parasites ad-here to the rules of island biogeography, and whether their distributions vary with transmission strategy. We utilised broad-spectrum parasite detection from existing Whole Genome Sequence (WGS) data to characterise parasites with varying transmission strategies from the blood of a passerine bird, the silvereye (Zosterops lateralis), sampled across 25 islands in the South Pacific and from five of the states in mainland Australia. Overall, parasite richness was higher on mainland Australia compared to islands and decreased with distance of islands from the Australian continent. However, these patterns were dependent on transmission strategy. For parasites transmitted by flying insect vectors, richness decreased on islands compared to the mainland. However, increasing isolation from the mainland among islands had little further impact. On the other hand, richness of directly transmitted parasites and those requiring another intermediate host declined sharply with increasing distance from the mainland. While islands may act as an initial barrier to colonisation for parasites relying on flying insect vectors, their highly dispersive vectors may subsequently reduce the impact of increasing isolation distance on richness. Our work underscores the importance of considering parasite life-histories and their transmission strategies for understanding the processes that shape parasite communities on islands.

ecology↗

bioRxiv2024

Islands promote diversification within the silvereye clade: a phylogenomic analysis of a great speciator

Geographic isolation plays a pivotal role in speciation by restricting gene flow between populations through distance or physical barriers. However, the speciation process is complex, influenced by the interplay between dispersal ability and geographic isolation, especially in "great speciators" - bird species present on multiple islands that, at the same time, have many subspecies. Comparing population differentiation in both continental and insular settings can help us to understand the importance of geographical context in the emergence of great speciators. The highly diverse white-eye family Zosteropidae includes several great speciators, including the silvereye (Zosterops lateralis) which consists of 16 subspecies, 11 occurring on islands. The distribution of the silvereye on the Australian continent and numerous southwest Pacific islands allows us to explore the influence of different forms of geographic isolation on population divergence. To do this, we conducted a comprehensive phylogenomic analysis of the silvereye and compared patterns of population divergence in insular versus continental silvereye populations. We estimate that the silvereye lineage emerged approximately 1.5 million years ago, followed by the split of the two main silvereye clades: Southern Melanesia and the broader South Pacific (encompassing Australia, New Zealand, and outlying islands). Continental populations show low genetic population structure, which suggests that they can overcome multiple forms of geographic barriers across long distances. In contrast, most island populations are highly structured even over relatively short distances. Divergence statistics further support the idea that water barriers lead to a higher population differentiation when compared to continental distances. Our results indicate that islands promote divergence and provide an empirical example of the geographical conditions that result in the emergence of great speciators.

evolutionary biology↗

bioRxiv2023

Standing genetic variation and de novo mutations underlie parallel evolution of island bird phenotypes

Parallel evolution occurs when the same trait evolves in closely related lineages in response to similar ecological contexts and provides some of the best examples of determinism in evolutionary biology. However, from a genetic standpoint, this process can be driven by either new mutations that appear independently in each diverging population or by selection on existing genetic variation common to both lineages. Small-bodied birds, for example, tend to increase in size after they colonise a new island, following what is known as the island rule. Such is the case of the silvereye (Zosterops lateralis), a prolific natural coloniser of southwest Pacific islands. Island forms of this bird species increase in body size after they establish, with the pattern and pace of change consistent with directional natural selection and evident even in the most recent colonisations within the last 200 years. The system provides an exceptional opportunity to explore the genomic basis of repeated body size evolution. We sequenced 377 whole genomes from 31 different silvereye populations, which revealed that both mechanisms are at play: in some lineages, new mutations are highly associated with body and bill size, but there are also highly associated polymorphisms present across all populations. Our research sheds light on the genomic basis of repeated body size evolution and emphasises that multiple molecular mechanisms can underlie similar evolutionary trajectories even within a single taxon.

evolutionary biology↗

bioRxiv2023

Candidate gene length polymorphisms are linked to dispersive behaviour: searching for a mechanism behind the "paradox of the great speciators"

The "paradox of the great speciators" has puzzled evolutionary biologists for over half a century. A great speciator requires excellent dispersal ability to explain its occurrence on multiple islands, but reduced dispersal ability to explain its high number of subspecies. A rapid reduction in dispersal ability is often invoked to solve this apparent paradox, but a proximate mechanism has not been identified. Here, we explore the role of six genes linked to migration and animal personality differences (CREB1, CLOCK, ADCYAP1, NPAS2, DRD4, and SERT) in 20 South Pacific populations of silvereye (Zosterops lateralis) that range from highly sedentary to partially migratory, to determine if genetic variation is associated with dispersal propensity. We detected genetic associations in three of the six genes: i) in a partial migrant population, migrant individuals had longer microsatellite alleles at the CLOCK gene compared to resident individuals from the same population; ii) CREB1 displayed longer average microsatellite allele lengths in recently colonised island populations (< 200 years), compared to evolutionarily older populations. Bayesian broken stick regression models supported a reduction in CREB1 length with time since colonisation and decreasing dispersal propensity; and iii) like CREB1, DRD4 showed differences in polymorphisms between recent and old colonisations but a further sample size is needed to confirm. ADCYAP1, SERT, and NPAS2 were variable but that variation was not associated with dispersal propensity. The association of genetic variants at three genes with migration and dispersal ability in silvereyes provides the impetus for further exploration of genetic mechanisms underlying dispersal shifts, and the prospect of resolving a long-running evolutionary paradox through a genetic lens.

evolutionary biology↗

bioRxiv2022

Species-wide genomics of kakapo provides transformational tools to accelerate recovery

The k[a]k[a]p[o] is a critically endangered, intensively managed, long-lived nocturnal parrot endemic to Aotearoa New Zealand. We generated and analyzed whole-genome sequence data for nearly all individuals living in early 2018 (169 individuals) to generate a high-quality species-wide genetic variant callset. We leverage extensive long-term metadata to quantify genome-wide diversity of the species over time and present new approaches using probabilistic programming, combined with a phenotype dataset spanning five decades, to disentangle phenotypic variance into environmental and genetic effects while quantifying uncertainty in small populations. We find associations for growth, disease susceptibility, clutch size, and egg fertility within genic regions previously shown to influence these traits in other species. Finally, we generate breeding values to predict phenotype and illustrate that active management over the past 45 years has maintained both genome-wide diversity and diversity in breeding values, and hence, evolutionary potential. We provide new pathways for informing future conservation management decisions for k[a]k[a]p[o], including prioritizing individuals for translocation and monitoring individuals with poor growth or high disease risk. Overall, by explicitly addressing the challenge of small sample size, we provide a template for the inclusion of genomic data that will be transformational for species recovery efforts around the globe.

genomics↗