Search bioRxiv⌕ Search

Biology subjects

Ridley, A.

Publications and source records attributed to Ridley, A..

2 recordsLinked to original sources

A comparative study of two grasswren species reveals strong genetic divergence between a peninsula and mainland population

Dispersal patterns dictate genetic population structure, and ultimately population resilience, through maintaining critical ecological processes and genetic diversity. Direct observation of dispersal events is not often possible, but genetic methods offer an alternative method of indirectly measuring dispersal. Here, we use 7 652 genome-wide single-nucleotide polymorphisms (SNPs) to evaluate genetic population structure and infer dispersal capabilities of the Western Grasswren (Amytornis textilis textilis; WGW) in Western Australia (n = 118), utilising a sister species, the Thick-billed Grasswren (Amytornis modestus; TBGW) as a comparison dataset (n = 80). We found genetic divergence and low genetic diversity between two populations (Hamelin and Peron) in the WGW, despite evidence of long dispersal distances within populations by females. In addition, the two WGW populations were found to be more genetically divergent than two described subspecies of TBGW, despite the WGW occurring over a smaller spatial scale. By comparing these two grasswren species, our data suggest a narrow strip of land may be acting as a geographic barrier in the WGW, limiting dispersal between a peninsula population to the mainland. We investigate if morphology aligns with genetic divergence, with some estimates of divergence between WGW populations greater than those between subspecies of TBGW. However, confidence intervals were large, preventing definitive conclusions. Our results support the hypothesis that peninsula populations of small, ground-dwelling birds are genetically isolated from adjacent mainland populations. Furthermore, there is evidence to suggest that the limited gene flow is asymmetrical, with directional dispersal occurring from the bounded peninsula population to the mainland. Our study also highlights how substantial genetic divergence does not necessarily coincide with phenotypic differences.

genetics↗

Single cell analysis of spondyloarthritis regulatory T cells identifies distinct synovial gene expression patterns and clonal fates

Regulatory T cells (Tregs) play an important role in controlling inflammation and limiting autoimmunity, but their phenotypes at inflammatory sites in human disease are poorly understood. We here analyze the single-cell transcriptome of >16,000 Tregs obtained from peripheral blood and synovial fluid of two patients with HLA-B27+ ankylosing spondylitis and three patients with psoriatic arthritis, closely related forms of inflammatory spondyloarthritis. We identify multiple Treg clusters with distinct transcriptomic profiles, including, among others, a regulatory CD8+ subset expressing cytotoxic markers/genes, and a Th17-like RORC+ Treg subset characterized by IL-10 and LAG-3 expression. Synovial Tregs show upregulation of interferon signature and TNF receptor superfamily genes, and marked clonal expansion, consistent with tissue adaptation and antigen contact respectively. Individual synovial Treg clones map to different clusters indicating cell fate divergence. Finally, we demonstrate that LAG-3 directly inhibits IL-12/23 and TNF secretion by patient-derived monocytes, a mechanism with translational potential in SpA. Our detailed characterization of Tregs at an important inflammatory site illustrates the marked specialization of Treg subpopulations.

immunology↗