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Biology subjects

Reeve, J.

Publications and source records attributed to Reeve, J..

3 recordsLinked to original sources

The role of chromosomal inversions in local adaptation and ecotype formation across a variable landscape in an intertidal snail

Adaption to environmental variation can be discrete or continuous, responding to sharp or gradual habitat transitions. Chromosomal inversions accentuate these adaptive responses as multiple loci respond in tandem across a habitat transition. Earlier studies of Littorina saxatilis (Olivi, 1792) have shown that three ecotypes segregate in different habitats supported by polymorphisms in a few inversions. However, many more large inversions are polymorphic in this species and potentially have adaptive effects in response to uncharacterised environmental gradients. We sampled 200 random shores representing all kinds of shore habitats present in a 12x12 km area of a Swedish archipelago, with L. saxatilis found at 196 sites. Environment and shell morphology were summarised using dimension reduction analyses, and Bayesian regression models were used to analyse the relationships between phenotype, environment and inversions. Phenotypic variation was a continuum with previously described ecotypes positioned in different parts. 18 inversions responded to at least one dimension of environmental variation, and over (12) half influenced the measured phenotypes. Overall, inversion arrangements explained 15% of phenotypic variation, with limited direct contributions from the environment (<1%). Chromosomal inversions thus are a major factor for local adaptation in L. saxatilis, supporting adaptation across a landscape more complex than the previously described ecotypes.

evolutionary biology↗

Selection on many loci drove the origin and spread of a key innovation

Key innovations are fundamental to biological diversification, but their genetic architecture is poorly understood. A recent transition from egg-laying to live-bearing in Littorina snails provides the opportunity to study the architecture of an innovation that has evolved repeatedly in animals. Samples do not cluster by reproductive mode in a genome-wide phylogeny, but local genealogical analysis revealed numerous genomic regions where all live-bearers carry the same core haplotype. Associated regions show evidence for live-bearer-specific positive selection, and are enriched for genes that are differentially expressed between egg-laying and live-bearing reproductive systems. Ages of selective sweeps suggest live-bearing alleles accumulated gradually, involving selection at different times in the past. Our results suggest that innovation can have a polygenic basis, and that novel functions can evolve gradually, rather than in a single step.

evolutionary biology↗

An Atlas of Human and Murine Genetic Influences on Osteoporosis

Osteoporosis is a common debilitating chronic disease diagnosed primarily using bone mineral density (BMD). We undertook a comprehensive assessment of human genetic determinants of bone density in 426,824 individuals, identifying a total of 518 genome-wide significant loci, (301 novel), explaining 20% of the total variance in BMD--as estimated by heel quantitative ultrasound (eBMD). Next, meta-analysis identified 13 bone fracture loci in ~1.2M individuals, which were also associated with BMD. We then identified target genes from cell-specific genomic landscape features, including chromatin conformation and accessible chromatin sites, that were strongly enriched for genes known to influence bone density and strength (maximum odds ratio = 58, P = 10-75). We next performed rapid throughput skeletal phenotyping of 126 knockout mice lacking eBMD Target Genes and showed that these mice had an increased frequency of abnormal skeletal phenotypes compared to 526 unselected lines (P < 0.0001). In-depth analysis of one such Target Gene, DAAM2, showed a disproportionate decrease in bone strength relative to mineralization. This comprehensive human and murine genetic atlas provides empirical evidence testing how to link associated SNPs to causal genes, offers new insights into osteoporosis pathophysiology and highlights opportunities for drug development.

genomics↗