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Biology subjects

Ray, E.

Publications and source records attributed to Ray, E..

2 recordsLinked to original sources

Deformable Models-Based Retinal OCT Layer Segmentation and Classification with Feature Analysis

Optical coherence tomography (OCT) is widely used for retinal disease assessment, but automated quantitative analysis remains challenging because of anatomical variability and noisy imaging conditions. This study presents an interpretable OCT classification framework based on four anatomically guided retinal layers, combining preprocessing, adaptive segmentation, targeted feature engineering, and supervised classification to identify Normal, CNV, DME, and Drusen cases. Layer-specific descriptors included statistical, derivative, fluid-related, and GLCM texture markers. Feature correlation and ranking analyses showed that the proposed descriptors were highly complementary, that the most informative features were concentrated in layers 2 and 4, and that layers 1 and 3 contributed supportive structural information. Among the evaluated classifiers, the neural network performed best, achieving an accuracy of 98.17%, sensitivity of 97.88%, specificity of 99.38%, and AUC of 0.9985. Computational analysis showed efficient training and inference, with a total training time of 2216.3 s, prediction speed of approximately 160000 observations per second, and a compact model size of about 11 kB. These results demonstrated that anatomically guided feature extraction can provide accurate, efficient, and interpretable OCT disease classification, offering a practical alternative to less transparent end-to-end deep learning approaches.

bioinformatics↗

Quantitative evaluation of enrichment protocols on rhesus macaques welfare in laboratory environment.

Non-human primates are crucial animal models in biomedical research including neurosciences. Legal frameworks ensure that participation of monkeys in biomedical research follows an ethical assessment, driven by specific guidelines for ensuring animal well-being. Those guidelines promote continued refinement of practices to improve animal wellbeing, yet quantitative data to inform such refinements is limited. In this context, we investigated the impact of modifications to the housing that created either navigational complexity or visual access to neighbouring animals on the behaviour of rhesus macaques. Then we quantified the value of different enrichment programmes based on manipulable objects. We showed that making navigation within a modular housing more complex, or adding transparent separations between housing units is associated with significant reduction of severe aggression, stereotypical behaviours and a significant increase of appeasing behaviours. We also observed a positive effect of manipulable objects with an increase in the expression of appeasing behaviours and a decrease in abnormal or stereotypical behaviours. Finally, our study revealed significant inter-individual variability that was not explained by sex, age, social network size or social status. Overall, our results point to the importance and benefits of environmental changes and enrichment protocols, and of the critical need for personalised enrichment programmes.

animal behavior and cognition↗