Biology subjects

Ratliff, J. M.

Publications and source records attributed to Ratliff, J. M..

3 recordsLinked to original sources

bioRxiv2025

Structured and Target-Specific Development of Cortico-Cortical Connectivity in the Mouse Visual Cortex

The mammalian cortex exhibits highly stereotyped long-range connectivity, yet the developmental principles that specify precise cortico-cortical projection patterns remain poorly defined. Two dominant models propose that target specificity arises either from early inter-regional exuberant outgrowth followed by pruning, or through initially directed axonal targeting. To resolve this, we systematically mapped the postnatal development of V1 cortico-cortical projection neurons (CCPNs) to eleven higher visual areas (HVAs) in mice using rapid and complementary retrograde, anterograde, and single-cell tracing methods. We found that V1[->]HVA connectivity develops via spatiotemporally staggered axon extension and pruning programs, aligned with target position along the medial-lateral axis. Reciprocal HVA[->]V1 feedback emerges concurrently and is refined over time, yielding gradually aligned bidirectional connectivity. Notably, both multiplexed retrograde tracing and MAPseq-based single-cell profiling revealed that individual V1 neurons initialize and retain specific projection motifs with limited variation over development, arguing against global exuberance followed by selective, inter-areal pruning. Instead, our findings support a directed guidance model, in which distinct V1 CCPN subtypes establish selective projection patterns early, followed by local, target-dependent refinement. This structured yet heterogeneous developmental strategy provides an anatomical framework for how precise long-range cortical networks emerge. HIGHLIGHTSO_LIV1[->]HVA connections form via directed axonal targeting, establishing motifs early with little variation C_LIO_LIMedial targets are innervated earlier and refine gradually, lateral targets later and rapidly C_LIO_LIFeedforward and feedback V1-HVA circuits emerge concurrently C_LIO_LIBidirectional like-to-like V1-HVA connectivity refines across development C_LI

neuroscience↗

bioRxiv2024

Neocortical long-range inhibition promotes cortical synchrony and sleep

Sleep and wakefulness are associated with distinct cortical patterns of rhythmic activity. During low-arousal states such as slow wave sleep, synchronous low-frequency rhythms dominate activity across widespread cortical regions. Although inhibitory neurons are increasingly recognized as key players of cortical state, the in vivo circuit mechanisms coordinating synchronized activity across local and distant neocortical networks remain poorly understood. Here, we show that somatostatin and chondrolectin co-expressing cells (Sst-Chodl), a sparse and genetically distinct class of neocortical GABAergic inhibitory neurons, are selectively active during low-arousal states and largely silent during periods of high arousal. In contrast to most neocortical inhibitory neurons, Sst-Chodl cells, despite being extremely sparse, exert widespread influence across the neocortex via long-range axons that simultaneously target multiple regions. Selective activation of Sst-Chodl cells is sufficient to promote multi-region cortical synchronization characteristic of low-arousal states and to induce sleep. Together, these findings show that long-range Sst-Chodl inhibitory neurons not only track behavioral state but can actively promote sleep-like cortical activity and sleep behavior, highlighting an important contribution of cortical circuits to sleep regulation alongside established subcortical mechanisms.

neuroscience↗

bioRxiv2024

Disruption of Cholinergic Retinal Waves Alters Visual Cortex Development and Function

Retinal waves represent an early form of patterned spontaneous neural activity in the visual system. These waves originate in the retina before eye-opening and propagate throughout the visual system, influencing the assembly and maturation of subcortical visual brain regions. However, because it is technically challenging to ablate retina-derived cortical waves without inducing compensatory activity, the role these waves play in the development of the visual cortex remains unclear. To address this question, we used targeted conditional genetics to disrupt cholinergic retinal waves and their propagation to select regions of primary visual cortex, which largely prevented compensatory patterned activity. We find that loss of cholinergic retinal waves without compensation impaired the molecular and synaptic maturation of excitatory neurons located in the input layers of visual cortex, as well as layer 1 interneurons. These perinatal molecular and synaptic deficits also relate to functional changes observed at later ages. We find that the loss of perinatal cholinergic retinal waves causes abnormal visual cortex retinotopy, mirroring changes in the retinotopic organization of gene expression, and additionally impairs the processing of visual information. We further show that retinal waves are necessary for higher order processing of sensory information by impacting the state-dependent activity of layer 1 interneurons, a neuronal type that shapes neocortical state-modulation, as well as for state-dependent gain modulation of visual responses of excitatory neurons. Together, these results demonstrate that a brief targeted perinatal disruption of patterned spontaneous activity alters early cortical gene expression as well as synaptic and physiological development, and compromises both fundamental and, notably, higher-order functions of visual cortex after eye-opening.

neuroscience↗