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Rashida, Z.

Publications and source records attributed to Rashida, Z..

2 recordsLinked to original sources

Convergent cellular adaptation to a quiescence-like state in response to freeze-thaw stress

Extreme stress, such as freeze-thaw, poses a severe challenge to many organisms, but the mechanisms underlying their adaptation to survive such stress remain elusive. Here, we show that Saccharomyces cerevisiae can rapidly evolve freeze-thaw tolerance through a physiological state transition, with survival increasing nearly two orders of magnitude from {approx}2% to {approx}70% in about 25 cycles of stress exposure. Evolved yeast cells exhibit a quiescence-like state, characterized by altered cellular physiology: increased intracellular trehalose accumulation, reduced membrane damage, cytoplasmic stiffening and an exit from a proliferative cycle. This mechano-chemically reinforced survival strategy emerges across independent evolutionary lines despite distinct genetic backgrounds, suggesting a convergent mechanism of adaptation. By integrating experimental evolution, biophysical measurements, genomic analysis, and a quantitative model that captures the adaptation dynamics, we reveal that stress tolerance can arise via a potentially generalizable, physiologically mediated adaptation strategy. These findings provide new insights into microbial survival under extreme conditions and suggest broader implications for cellular stress responses beyond yeast.

evolutionary biology↗

A tRNA modification balances carbon and nitrogen metabolism by regulating phosphate homeostasis, to couple metabolism to cell cycle progression.

Cells must appropriately sense and integrate multiple metabolic resources to commit to proliferation. Here, we report that cells regulate carbon and nitrogen metabolic homeostasis through tRNA U34-thiolation. Despite amino acid sufficiency, tRNA-thiolation deficient cells appear amino acid starved. In these cells, carbon flux towards nucleotide synthesis decreases, and trehalose synthesis increases, resulting in a starvation-like metabolic signature. Thiolation mutants have only minor translation defects. However, these cells exhibit strongly decreased expression of phosphate homeostasis genes, resulting in an effectively phosphate-limited state. Reduced phosphate enforces a metabolic switch, where glucose-6-phosphate is routed towards storage carbohydrates. Notably, trehalose synthesis, which releases phosphate and thereby restores phosphate availability, is central to this metabolic rewiring. Thus, cells use thiolated tRNAs to perceive amino acid sufficiency, and balance carbon and amino acid metabolic flux to maintain metabolic homeostasis, by controlling phosphate availability. These results further biochemically explain how phosphate availability determines a switch to a starvation-state.

biochemistry↗