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Biology subjects

Ramos-Silva, P.

Publications and source records attributed to Ramos-Silva, P..

2 recordsLinked to original sources

Current and future ocean chemistry negatively impacts calcification in predatory planktonic snails

Planktonic gastropods mediate an important flux of carbonate from the surface to the deep ocean. However, we know little about the response of atlantid heteropods, the only predatory, aragonite shelled zooplankton, to ocean acidification (OA), and they are not incorporated in any carbonate flux models. Here we quantify the effects of OA on calcification and gene expression in atlantids across three pH scenarios: mid-1960s, ambient, and future 2050 conditions. Atlantid calcification responses to decreasing pH were negative, but not uniform, across the three scenarios. Calcification was reduced from mid-1960s to ambient conditions, and longer shells were grown under 2050 conditions. Differential gene expression indicated a stress response at both ambient and future conditions, with down-regulation of growth and biomineralization genes with decreasing pH. Our results suggest that ocean chemistry in the South Atlantic is already limiting atlantid calcification, and that exposure to near-future OA triggers rapid shell growth under stress.

ecology↗

From root to tips: sporulation evolution and specialization in Bacillus subtilis and the intestinal pathogen Clostridioides difficile

Bacteria of the Firmicutes phylum are able to enter a developmental pathway that culminates with the formation of a highly resistant, dormant spore. Spores allow environmental persistence, dissemination and for pathogens, are infection vehicles. In both the model Bacillus subtilis, an aerobic species, and in the intestinal pathogen Clostridioides difficile, an obligate anaerobe, sporulation mobilizes hundreds of genes. Their expression is coordinated between the forespore and the mother cell, the two cells that participate in the process, and is kept in close register with the course of morphogenesis. The evolutionary mechanisms by which sporulation emerged and evolved in these two species, and more broadly across Firmicutes, remain largely unknown. Here, we trace the origin and evolution of sporulation. Using the genes involved in the process in B. subtilis and C. difficile, and estimating their gain-loss dynamics in a comprehensive bacterial macro-evolutionary framework we show that sporulation evolution was driven by two major gene gain events, the first at the base of the Firmicutes and the second at the base of the B. subtilis group and within the Peptostreptococcaceae family, which includes C. difficile. We also show that early and late sporulation regulons have been co-evolving and that sporulation genes entail greater innovation in B. subtilis with many Bacilli-lineage restricted genes. In contrast, C. difficile more often recruits new sporulation genes by horizontal gene transfer, which reflects both its highly mobile genome, the complexity of the gut microbiota and an adjustment of sporulation to this particular ecosystem.

evolutionary biology↗