Biology subjects

Ragland, G.

Publications and source records attributed to Ragland, G..

4 recordsLinked to original sources

bioRxiv2026

Continuous thermal sensitivity of gene expression following acclimation in Drosophila subobscura

The physiology of ectotherms can change substantially during acclimation to changing environmental temperature. The role of transcription in acclimation responses has been well-established, but it remains unclear whether transcriptional regulation generally reflects abrupt changes after surpassing temperature thresholds, or whether transcript abundance is a relatively monotonic, continuous function of acclimation temperature. In this study we exposed adult male Drosophila subobscura flies to four different 96-hour acclimation treatments at temperatures that were not acutely stressful but ranged from relatively cold (10{degrees}C) to relatively warm (27{degrees}C) with respect to standard rearing conditions. Transcriptome sequencing of whole-body homogenates (mRNAseq) revealed a massive, transcriptome-wide response across acclimation temperatures, with a marked overrepresentation of genes that were continuously and monotonically up- and down-regulated in response to increasing acclimation temperature. Though some genes showed more complex relationships consistent with putative threshold responses, a high percentage of the differentially expressed transcriptome (42%) showed continuous and strictly monotonic relationships. Functional enrichment suggested continuous up-regulation of spermatogenesis-related transcripts with increasing temperature and continuous up-regulation of oxidative phosphorylation-related transcripts with decreasing temperature, illustrating contrasting patterns consistent with previous studies of thermal sensitivity of male reproduction and metabolic compensation in the cold. Thus, continuous thermal sensitivity of transcription is a hallmark of acclimation in D. subobscura that likely underlies the continuous thermal sensitivity of downstream physiological processes. We also provide evidence for shared transcriptomic responses across short-term acclimation (this study) vs. published results for long-term, developmental acclimation.

evolutionary biology↗

bioRxiv2025

QTL identification and characterization of the recombination landscape of the mountain pine beetle (Dendroctonus ponderosae)

Insect pests can rapidly accumulate in number and thrive in diverse environments, making them valuable models for studying phenotypic plasticity and the genetic basis of local adaptation. The mountain pine beetle (Dendroctonus ponderosae) is a major forest pest and adult body size and generation time are two traits that vary among populations and directly influence reproductive success and outbreak dynamics. To identify regions of the genome linked to these two traits, we generated ddRAD sequencing data from an F2 intercross, using populations from two Y haplogroups with phenotypic and genetic differences in these traits. A high-density linkage map was generated and QTL analyses performed. We identified a single large effect QTL for generation time, associated with an adult diapause. The QTL spans the entire X chromosome, peaking over the evolutionarily conserved portion of the X. We were unable to detect a significant QTL for body size. Our linkage map identified putative inversions shared by parents that are absent in the published reference genome, with three putative inversions on chromosomes 2, 3, and the X. We also detected extensive regions of low recombination that were associated with low gene density, indicative of large pericentromeric regions. Surprisingly, we found that in our cross, F2 males inherited X chromosomes with significantly fewer crossover events than F2 females. Our findings provide information about the recombination landscape, the sex-biased inheritance of recombined Xs, and the genomic location of a key trait in a major forest pest.

genetics↗

bioRxiv2023

Conserved cold tolerance of Rhagoletis species from different host fruits, elevations in Colorado, USA

Understanding and characterizing how insects tolerate low temperatures is important for predicting their overwintering survival and subsequent geographic spread. This study characterized the cold tolerance of two members of the Rhagoletis genus in Colorado, U.S.A. Pupae were collected from infested fruit in late summer and early fall. For the first time, we show that the rosehip fly Rhagoletis basiola is freeze-avoidant; overwintering pupae could supercool to temperatures as low as -26{degrees}C and survive. Interestingly, the temperature at which ice forms (supercooling point; SCP) did not vary between R. basiola at high (c. 2900 m above sea level) and lower (c. 1650 m a.s.l.) elevations. We also report the apple maggot Rhagoletis pomonella infesting an unusual host fruit, the Dolgo crabapple, in close proximity to infested hawthorn trees. R. pomonella infesting hawthorn fruits and crabapples had similar SCPs, and survived temperatures as low as -21{degrees}C. Pupae from both host fruits also survived prolonged exposure (2 weeks or more) to mild low temperatures (0 to -5{degrees}C). Further study into the mechanisms underlying the impressive and conserved cold tolerance of R. pomonella and R. basiola is an interesting avenue for future research.

zoology↗

bioRxiv2023

Comparative transcriptomics provides insight into molecular mechanisms of zinc tolerance in the ectomycorrhizal fungus Suillus luteus

Zinc is a major soil contaminant and high zinc levels can disrupt growth, survival, and reproduction of fungi. Some fungal species have evolved zinc tolerance through cell processes mitigating zinc toxicity, though the genes and detailed mechanisms underlying fungal zinc tolerance remain unexplored. To fill this gap in knowledge, we investigated the gene expression of zinc tolerance in the mycorrhizal fungus Suillus luteus. We found that zinc tolerance in this species is both a constitutive and environmentally dependent trait. Highly differentially expressed genes were predicted to be involved in transmembrane transport, metal chelation, oxidoreductase activity, and signal transduction. Some of these genes were previously reported as candidates for S. luteus zinc tolerance, while others are reported here for the first time. Overall, we found S. luteus zinc tolerance is associated with differences in expression of genes involved in metal exclusion and immobilization, as well as recognition and mitigation of metal-induced oxidative stress. Our results contribute to understanding the mechanisms of fungal metal tolerance and pave the way for further research on the role of metal tolerance in mycorrhizal associations.

genomics↗