Qureshi, Q. | Search bioRxiv

bioRxiv2026

Carnivores in a metropolitan forest island: first spatial capture-recapture estimates reveal high densities of leopards and striped hyenas in Jaipur, India

Urban protected areas (PAs) have become important habitats for wildlife in rapidly expanding human-dominated landscapes. These PAs may provide refuge and continuously abundant resources, which may enable some adaptable carnivores to persist and attain high abundances. However, little is known about the population ecology and interactions between carnivores sharing such spatially restricted and disturbed urban habitats. We evaluated the densities and spatio-temporal interactions of leopards (Panthera pardus) and striped hyenas (Hyaena hyaena) in Jhalana-Amagarh Conservation Reserve, a protected area (PA) embedded within the metropolis of Jaipur, India. During May-July 2025, we deployed 30 paired camera-traps and used spatially explicit capture-recapture models to estimate density and individual activity centres. We further quantified their diel activity and temporal overlap using kernel density estimation. Leopard density was estimated at 7.03 {+/-} 1.31 individuals/10 km sq and striped hyena density at 4.06 {+/-} 0.96 individuals/10 km sq, with activity centres of both species occurring in close proximity and frequently towards the reserve periphery. Both species were predominantly nocturnal and showed high temporal overlap ({Delta}4 = 0.801, CI=0.73-0.86). Our results report exceptionally high leopard and striped hyena densities in an urban PA and exemplify the importance of small PAs within rapidly expanding cities, stressing the need for finer-scale studies more broadly to understand the mechanisms shaping interactions between the two species. However, such systems require careful management of food subsidies, habitat quality and connectivity along with long-term monitoring of population viability, disease dynamics and human-wildlife conflict.

ecology↗

bioRxiv2026

Toward A Whole-Brain Interface Enabled by High-Resolution Surface Electrophysiology

The goal of building a whole-brain interface - capable of generating a real-time digital representation of the state of the entire central nervous system - has long been framed as a hardware challenge of recording simultaneously from ever-larger numbers of microelectrodes. Advances in high-resolution neural interfaces now enable electrophysiologic interaction with the human nervous system at spatial and temporal resolutions previously unattainable without disrupting tissue architecture or physiology. These capabilities create new opportunities for mechanistic neuroscience, neuroprosthetics, and precision-guided neurosurgery. With the advent of modern microelectrode array technology, however, the whole-brain interface has also become a data challenge. Rather than pursuing large-scale human brain recording purely through a single device placed in a single patient, we demonstrate here that systematic multi-subject aggregation, across brain regions and behavioral paradigms, in a common anatomical framework, can achieve something functionally similar to a whole-brain interface. Here we present an approach to a functional atlas of the human central nervous system derived from high-resolution surface electrophysiology recordings obtained in the first 70 patients implanted with an anatomically conformal, thin-film neural interface positioned in more than 100 locations. The atlas comprises >100,000 electrode deployments and catalogs placement across a broad range of neuroanatomic targets spanning the motor, sensory, language, auditory, and associative domains, as well as brainstem and spinal cord structures that have historically been difficult to access at high electrophysiologic resolution. Across participants, aggregated recordings reveal somatotopic organization, including digit representations that follow a lateral-to-medial ordering consistent with classical homuncular maps, with transitions between adjacent representations occurring over spatial scales of approximately 0.8 - 2.0 mm; canonical frequency-band signatures, such as movement-related beta-band suppression and focal high-gamma (70 - 200 Hz) increases during motor and speech behaviors; and task-modulated population dynamics in both evoked and spontaneous activity across cortical, brainstem, and spinal cord regions. These findings yield insight into patterns of mesoscale electrophysiological dynamics conserved across the entire human central nervous system, suggesting that fine-scale functional organization is preserved across individuals when aligned to common anatomical landmarks. We further demonstrate several applications of these high-resolution recordings, including real-time neural decoding from upper extremity motor cortex to enable real-time neuroprosthetic control, and from ventrolateral cortex to decode cortical correlates of spoken language, facial movements, and complex facial expressions of emotion, supporting initial feasibility of combined verbal and nonverbal communication interfaces. Together, these results establish a paradigm for approaching large-scale interfaces with the human brain, as well as a starting point for a scalable, extensible atlas of human electrophysiologic function designed to accelerate discovery across basic neuroscience, translational research, and clinical neurotechnology.

neuroscience↗

bioRxiv2020

Serum alpha-mannosidase as an additional barrier to eliciting oligomannose-specific HIV-1-neutralizing antibodies

Oligomannose-type glycans on HIV-1 gp120 form a patch that is targeted by several broadly neutralizing antibodies (bnAbs) and that therefore is of interest to vaccine design. However, attempts to elicit similar oligomannose-specific bnAbs by immunizing with oligomannosidic glycoconjugates have only been modestly successful so far. A common assumption is that eliciting oligomannose-specific bnAbs is hindered by B cell tolerance, resulting from the presented oligomannosides being sensed as self molecules. Here, we present data, along with existing scientific evidence, supporting an additional, or perhaps alternate, explanation: serum mannosidase trimming of the presented oligomannosides in vivo. Mannosidase trimming lessens the likelihood of eliciting antibodies with capacity to bind full-sized oligomannose, which typifies the binding mode of existing bnAbs to the oligomannose patch. The rapidity of the observed trimming suggests the need for immunization strategies and/or synthetic glycosides that readily avoid or resist mannosidase trimming upon immunization and can overcome possible tolerance restrictions.

immunology↗