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Quiroz Monnens, S.

Publications and source records attributed to Quiroz Monnens, S..

2 recordsLinked to original sources

Evaluating the value and limits of null-models for Lesion Network Mapping

Lesion Network Mapping (LNM) is a method used to map symptom-related circuits in the human brain. Recent work has raised concerns about the method and the specificity of LNM-derived networks, which often show high spatial overlap across unrelated conditions. Null models have been proposed to address the raised limitations1. Useful statistical tools in network neuroscience, they are reference procedures; in LNM, the normative connectome matrix C remains the source of the derived networks also under null modelling. Their broader role as a general solution for LNM therefore warrants careful evaluation. Here, we examine the proposed null models step-by-step and test them empirically across multiple datasets. We show that the proposed null-model correction effectively only replaces C with a transformed matrix C' (e.g., C' ~ C - mean(C)), one that is directly derived from C and retains much of its low-dimensional structure. Consequently, null-model-corrected LNM maps remain shaped by the same standard set of connectome-derived patterns and continue to show repetition and non-specificity across unrelated conditions. We discuss the scope and limitations of null models for LNM, showing that they can statistically benchmark LNMs, but that their application does not resolve the core limitation of non-specificity of LNM networks.

neuroscience↗

The Recurrent Temporal Restricted Boltzmann Machine Captures Neural Assembly Dynamics in Whole-brain Activity

Animal behaviour alternates between stochastic exploration and goal-directed actions, which are generated by the underlying neural dynamics. Previously, we demonstrated that the compositional Restricted Boltzmann Machine (cRBM) can decompose whole-brain activity of larval zebrafish data at the neural level into a small number ([~]100-200) of assemblies that can account for the stochasticity of the neural activity (van der Plas et al., eLife, 2023). Here we advance this representation by extending to a combined stochastic-dynamical representation to account for both aspects using the Recurrent Temporal RBM (RTRBM) and transfer-learning based on the cRBM estimate. We demonstrate that the functional advantage of the RTRBM is captured in the temporal weights on the hidden units, representing neural assemblies, for both simulated and experimental data. Our results show that the temporal expansion outperforms the stochastic-only cRBM in terms of generalisation error and achieves a more accurate representation of the moments in time. Lastly, we demonstrate that we can identify the original time-scale of assembly dynamics by estimating multiple RTRBMs at different temporal resolutions. Together, we propose that RTRBMs are a valuable tool for capturing the combined stochastic and time-predictive dynamics of large-scale data sets.

neuroscience↗