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Biology subjects

Purushotham, P.

Publications and source records attributed to Purushotham, P..

2 recordsLinked to original sources

A molecular description of plant cellulose biosynthesis inhibition

Dictating cell growth and morphology, cellulose biosynthesis is intrinsic to plant cell biology. Accordingly, cellulose biosynthesis inhibitors (CBIs) are important herbicides, toxins, and experimental tools. We currently lack mechanistic understanding of CBI activity, preventing engineering of herbicide selectivity and disease immunity. Contrasting classical inhibitors, we unexpectedly identify the unusual Streptomyces phytotoxin thaxtomin A as the only in vitro-active CBI, with unprecedentedly broad-spectrum activity against various cellulose synthase enzymes. High-resolution cryo-electron microscopy reveals that thaxtomin A leverages exotic nitroaromatic chemistry to target a strictly conserved site in cellulose synthases polysaccharide secretion channel. Strikingly, in vitro biosynthesis and biophysical assays demonstrate thaxtomin As near-picomolar efficacy. Plant and algal systems reveal that its global arrest of cellulose biosynthesis produces an osmotically driven crisis in expanding cells. Finally, site-directed mutagenesis generates the first toxin-resistant cellulose synthase. Our results underscore celluloses critical function in plant lifeforms and inform efforts to inhibit related enzymes across kingdoms.

plant biology↗

A near gap-free haplotype-resolved genome assembly of Zoysia japonica uncovers intra-subgenomic gene expression and regulatory variation

Zoysiagrass is a warm-season allotetraploid turfgrass valued for stress tolerance, but high heterozygosity and polyploidy have impeded accurate genome assembly. Here, a near gap-free, allele-aware, fully phased genome of Zoysia japonica cv. Palisades was assembled using PacBio HiFi and Hi-C data. The assembly resolves 20 chromosome pairs (317.2 and 317.0 Mb for haplotypes 1 and 2) with telomeric repeats at both ends of all chromosomes, attains 98.3% BUSCO completeness and 99% completeness by Merqury, and comprises approximately 50% repetitive DNA and about 40,000 protein-coding genes per haplotype. Comparative analysis identified roughly 2.9 million SNPs and numerous structural variants. Hemizygous genes were widespread (4,863 in hap-1 and 4,519 in hap-2), enriched within insertion regions, highly divergent regions, and haplotype-unique sequences, and showed elevated expression relative to homozygous genes. Among 539 one-to-one coding-identical homologs, 29 exhibited haplotype-biased expression associated with upstream promoter variants. This phased genome enables marker development, genetic mapping, and trait dissection in heterozygous polyploids.

genomics↗