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Biology subjects

Puliti, S.

Publications and source records attributed to Puliti, S..

2 recordsLinked to original sources

MillionTrees: A global benchmark for tree detection across geography, sensor, and annotation geometry

Airborne tree monitoring using remotely sensed data, combined with the growth of computer vision models for object detection and segmentation, can facilitate broad scale assessment of tree health, ecology and ecosystem function. However, datasets for airborne tree detection have been largely limited to a single geography, resolution, or annotation approach, making it difficult to develop general models and benchmark their utility for broad applications. We compile existing and newly published annotation datasets to create a comprehensive dataset for training and evaluating airborne tree detection in RGB imagery. The MillionTrees dataset has over a million individual trees from a broad range of forest types, tree species, and geographic locations. In addition, it has six million weakly supervised annotations from a range of sources including airborne LiDAR and photogrammetry, arborist surveys, and simulated landscapes. An evaluation standard is provided to facilitate rapid model development. We benchmark several existing tree detection algorithms and demonstrate that while current open-source models do not generalize across the diverse datasets in the benchmark, training on MillionTrees improves both within-domain and out-of-domain performance. Held-out validation datasets using ground truth derived from terrestrial LiDAR paired with overhead RGB show that overfitting to test data is common and hyperparameter tuning is an underappreciated challenge towards a global zero shot tree detection method. We discuss the limitations of the currently available data for airborne RGB tree detection, how to create more robust evaluation data and the need for better understanding of the uncertainty and utility of tree detection from airborne remote sensing.

ecology↗

Reconstructing coniferous tree crown shape from incomplete point clouds using deep learning

Individual tree structure plays a key role in forest monitoring, biomass estimation, and ecological assessment. However, ground-based remote sensing methods such as terrestrial and mobile laser scanning frequently produce incomplete point clouds due to occlusion, particularly in the upper canopy. This limits the accuracy of derived structural metrics such as tree height or crown volume. In this study, we present a novel deep learning-based method to reconstruct the outer crown shape of coniferous trees from incomplete point clouds. Instead of completing the full tree structure, we focus on predicting the alpha-shape of the crown, enabling a more efficient and generalizable approach for structural reconstruction. We train a geometry-aware transformer model (AdaPoinTr) on synthetically generated partial tree crowns and evaluate its performance across three independent datasets encompassing different forest types and acquisition conditions. The model consistently improved crown shape similarity metrics and reduced height estimation errors compared to using partial data alone (reduced bias from -11% to -3.5%). Our results demonstrate that this shape-based strategy enables the extraction of key tree-level parameters from incomplete data, offering a practical solution for gaining improved 3D forest structural information from cost-sensitive or logistically constrained forest monitoring acquisitions.

plant biology↗