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Priest, N. K.

Publications and source records attributed to Priest, N. K..

8 recordsLinked to original sources

Presymptomatic plant disease detection with PSNet: A low-cost hyperspectral imaging and RGB fusion framework.

Plant pathogens cause yield losses worldwide, threatening food security and livelihoods. Because early infection is difficult to diagnose, management often relies on prophylactic pesticide use, increasing costs and environmental impact. Here we present PSNet, a multimodal framework that fuses hyperspectral imaging with RGB information for presymptomatic plant disease detection, together with a low-cost hyperspectral camera incorporating a 3D-printed housing, costing under {pound}500. We validate PSNet using Arabidopsis thaliana infected with the oomycete Albugo candida. Imaging at 2 and 4 days post inoculation, prior to visible symptoms, revealed spectral signatures that distinguished infected from healthy plants, while imaging at 6 days post inoculation captured the transition toward early symptom emergence. Discriminative spectral regions overlapped wavelengths associated with plant responses to biotic stress, supporting the biological plausibility of these signatures. Performance was evaluated using strict plant-level partitioning, ensuring samples from the same plant were confined to a single split. On a four-class task (healthy, 2 dpi, 4 dpi, 6 dpi), PSNet achieved 90.00% accuracy and 97.50% accuracy for binary classification. Together, these results demonstrate that presymptomatic detection is feasible under controlled conditions using low-cost hardware and multimodal learning, underscoring the potential of scalable multimodal systems for early disease monitoring.

plant biology↗

CactEcoDB: Trait, spatial, environmental, phylogenetic and diversification data for the cactus family

Integrated datasets linking traits, spatial distributions, environmental variables and phylogenies are essential for comparative research, but remain limited for many plant taxa, including those which are most threatened. Cactaceae are a morphologically and ecologically diverse succulent family that are iconic components of ecosystems across the Americas, and face high extinction risk. To support future comparative research, we present CactEcoDB (The Cactus Ecological Database), an Open Access dataset of curated spatial, ecological, trait, phylogenetic, and diversification data for over 1,000 cactus species. CactEcoDB includes species-level trait data, geographic occurrence records, environmental variables, range size estimates, speciation rates, and the largest time-calibrated phylogeny of cacti to date. By integrating these diverse data in a single platform, CactEcoDB enables analyses of trait evolution, trait-environment interactions, biogeography, climatic niche evolution, and macroevolutionary dynamics in one of the most celebrated and threatened plant families.

evolutionary biology↗

Insects fight low-dose infections with terminal investment, not innate immunity

Though the innate immune system is considered to be the primary defence promoting survival against pathogenic microbes, non-immunological strategies may provide cost-effective responses against ubiquitous low-dose infections. However, research using model systems has yet to develop a framework for systematically varying topical exposure doses, much less for examining how hosts mitigate the fitness costs associated with immune deployment. Here, we demonstrate that insects respond to low-dose infections with terminal investment. Female fruit flies, Drosophila melanogaster, have higher egg-to adult viability and lower survival when exposed to low-dose or sexually transmitted infections of an endemic fungus, Aspergillus austwickii. We identify Turandot C (TotC), a humoral stress response gene in insects, as the first non-immunological regulator of fecundity compensation. Strikingly, TotC-mediated fecundity compensation imposes negligible lifetime fitness costs, whereas expression of the canonical immune gene Dorsal-related immunity factor (Dif) triggers reproductively costly antagonistic pleiotropy. Contrary to foundational ecological theory, we show that terminal investment arises from immediate survival-reproduction trade-offs, not truncated reproductive potential. Our findings reveal that adaptive evolution of innate immunity is constrained by classical fitness trade-offs in response to ubiquitous low-dose infections, which permits the evolution of mechanisms in which the host strategically surrenders to the pathogen. Our study refines how we conceptualise host-pathogen evolutionary conflicts and underscores a need to understand how immunosuppression evolves in hosts under ecologically prevalent low-dose infections.

evolutionary biology↗

Did succulents diversify in response to aridity? Evolutionary analyses of major succulent lineages around the world

The succulent syndrome is one of the most iconic life strategies in angiosperms, maximising water storage through a suite of adaptations to water-scarcity. Though succulence is considered a classic case of convergent evolution driven by shared environmental drivers, we lack a full understanding of whether the timing and drivers of the diversification of succulent lineages are, in fact, concordant. Here we analyse time-calibrated phylogenetic reconstructions of the seven richest lineages of succulents, and study diversification dynamics in relation to abiotic variables. Our analyses reveal different levels of synchronicity and relation with aridity. The impact of atmospheric CO2 on succulent macroevolution is varied. While transitions and radiations are especially concentrated in recent time, following a collapse of atmospheric CO2 [~]15 million years ago, CO2-dependent diversification is not supported in most lineages. With the exception of Euphorbia, we find that succulence elevates net diversification, though the effects on underlying speciation and extinction disagree. The phylogenetic distribution of transitions to succulence and rate shift increases suggest these phenomena are decoupled, indicating that succulence might not adhere to a classic key innovation model. We discuss that these evolutionary patterns reveal the ecological complexity of the succulent strategy, beyond simplistic interpretations as adaptations towards aridity.

plant biology↗

Identifying the multiple drivers of Cactus diversification

Many drivers of diversification have been identified across the angiosperm Tree of Life, ranging from abiotic factors, such as climate change, to biotic factors such as key adaptations. While this provides invaluable evolutionary insight into the rise of major angiosperm lineages, our understanding of the complexity underlying this remains incomplete. In species-rich families such as Cactaceae, simple explanations of triggers of diversification are insufficient. Their sheer morphological and ecological diversity, and wide distribution across heterogeneous environments, render the identification of key forces difficult. Cactus diversification is likely shaped by multiple drivers, which themselves interact in complex ways. This complexity is extremely difficult to disentangle, but applying modern analytical methods to extensive datasets offers a solution. Here, we investigate the heterogeneous diversification of the iconic Cactus family. We reconstruct a comprehensive phylogeny, build a dataset of 39 abiotic and biotic variables, and predict the variables of central importance to tip-speciation rate variation using Machine Learning. State-dependent diversification models confirm that a rich range of eleven abiotic and biotic variables filtered as important by Machine Learning shape Cactus diversification. Of highest importance is an atypical latitudinal gradient in speciation rates, which is spatially decoupled from richness hotspots. Of medium importance is plant size, shaped by growth form. Of lesser, but significant, importance is soil composition, bioclimate, topography, geographic range size, and chromosome count. However, it is unlikely that any one of these eleven variables is of primary importance without the complex interactions formed with others. Our results contribute to our understanding of one of the most iconic angiosperm families, while revealing the need to account for the complexity underlying macroevolution.

evolutionary biology↗

Speciation across the Earth driven by global cooling in orchidoid orchids

Though climate change has been implicated as a major catalyst of diversification, its effects are thought to be inconsistent and much less pervasive than localised climate or the accumulation of species with time. But, we need focused analyses of highly specious clades to disentangle the consequences of climate change, geography and time. Here, we show that global cooling shapes the biodiversity of terrestrial orchids. Employing a phylogenetic framework of 1,450 species of Orchidoideae, the largest terrestrial orchid subfamily, we find that speciation rate is causally linked with historic global cooling, not time, habitation in the tropics, altitude, variation in chromosome number, or other types of historic climate change. Relative to the gradual accumulation of species with time, models specifying speciation driven by historic global cooling are 328 times more likely. Evidence ratios estimated for 212 other plant and animal groups reveal that the orchidoids represent one of the best-supported cases of temperature-spurred speciation yet reported. Employing >1.4 M georeferenced records, we find that global cooling drove contemporaneous diversification in each of the seven major orchid bioregions of the earth. With current emphasis on understanding and predicting the immediate impacts of global warming, our study provides a clear case study of the longterm impacts of global climate change on biodiversity. Significance statementThe staggering biodiversity of angiosperms has been difficult to reconcile with the gradual Darwinian process thought to create it. Changes in climate through the Earths history could have instigated this diversification, but perceived variability across clades and geography has restrained generalisation. In this paper, we reconstruct the evolutionary history of a rich terrestrial orchid subfamily favoured by Darwin (Orchidoideae, ~5,000 species), and use >1.4 million georeferenced records to test how and where those orchid species arose. We find that global cooling between the Oligocene and present day spurred an avalanche of speciation in orchidoid assemblages across the Earth. This work resolves the orchidoid phylogeny and provides a clear example of how historic climate change drives global patterns of biodiversity.

evolutionary biology↗

Extreme parallel evolution of flagellar motility is facilitated by synonymous sequence

Mutational hotspots can determine evolutionary outcomes and make evolution repeatable. Hotspots are products of multiple evolutionary forces including mutation rate heterogeneity, but this variable is often hard to identify. In this work we reveal that a powerfully deterministic genetic hotspot can be built and broken by a handful of silent mutations. We observed this when studying homologous immotile variants of the bacteria Pseudomonas fluorescens, AR2 and Pf0-2x. AR2 resurrects motility through highly repeatable de novo mutation of the same nucleotide in >95% lines in minimal media (ntrB A289C). Pf0-2x, however, evolves via a number of mutations meaning the two strains diverge significantly during adaptation. We determined that this evolutionary disparity was owed to just 6 synonymous variations within the ntrB locus, which we demonstrated by swapping the sites and observing that we were able to both break (>95% to 0% in AR2) and build (0% to 80% in Pf0-2x) a powerfully deterministic mutational hotspot. Our work reveals a fundamental role for silent genetic variation in determining adaptive outcomes.

evolutionary biology↗

Emergent biases in compensatory mutation can drive gene regulatory network evolution

Gene regulatory networks underlie every aspect of life; better understanding their assembly would better our understanding of evolution more generally. For example, evolutionary theory typically assumed that low-fitness intermediary pathways are not a significant factor in evolution, yet there is substantial empirical evidence of compensatory mutation. Here we revise theoretical assumptions to explore the possibility that compensatory mutation may drive rapid evolutionary recovery. Using a well-established in silico model of gene regulatory networks, we show that assuming only that deleterious mutations are not fatal, compensatory mutation is surprisingly frequent. Further, we find that it entails biases that drive the evolution of regulatory pathways. In our simulations, we find compensatory mutation to be common during periods of relaxed selection, with 8-15% of degraded networks having regulatory function restored by a single randomly-generated additional mutation. Though this process reduces average robustness, proportionally higher robustness is found in networks where compensatory mutations occur close to the deleterious mutation site, or where the compensatory mutation results in a large regulatory effect size. This location- and size-specific robustness systematically biases which networks are purged by selection for network stability, producing emergent changes to the population of regulatory networks. We show that over time, large-effect and co-located mutations accumulate, assuming only that episodes of relaxed selection occur, even very rarely. This accumulation results in an increase in regulatory complexity. Our findings help explain a process by which large-effect mutations structure complex regulatory networks, and may account for the speed and pervasiveness of observed occurrence of compensatory mutation, for example in the context of antibiotic resistance, which we discuss. If sustained by in vitro experiments, these results promise a significant breakthrough in the understanding of evolutionary and regulatory processes.

systems biology↗