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Polak, S.

Publications and source records attributed to Polak, S..

2 recordsLinked to original sources

Phenomenological model of transthyretin stabilization

Transthyretin is a tetrameric transport protein whose monomers, when destabilized, can misfold and form amyloid fibrils, leading to serious diseases like transthyretin amyloidosis cardiomyopathy and neuropathy. While kinetic stabilisers such as tafamidis or acoramidis are designed to prevent tetramer dissociation, clinical data show a puzzling increase in TTR levels after treatment - an effect our study seeks to investigate by exploring possible underlying mechanisms. Using a simple phenomenological model, we explore whether reduced dissociation alone accounts for this rise or if other mechanisms contribute. We propose that stabilisers may alter TTR clearance by slowing its cellular internalisation or degradation, or even by influencing its synthesis through pharmacological chaperoning. We also examine the role of monomer removal from circulation via re-association into tetramers or through other, possibly pathogenic processes. By integrating pharmacokinetic and pharmacodynamic data with experimental observations, our model provides fresh insights into TTR homeostasis and offers testable predictions for future research. This study highlights the power of simplified, hypothesis-driven models in uncovering biological mechanisms - or, at the very least, in identifying key questions that remain to be answered.

pathology↗

Highly dynamic evolution of the chemosensory gene repertoire driven by gene gain and expansion across subterranean beetles

Chemical cues in subterranean habitats differ highly from those on the surface due to the contrasting environmental conditions, such as absolute darkness, high humidity or food scarcity. Subterranean animals underwent changes to their sensory systems to facilitate the perception of essential stimuli for underground lifestyles. Despite representing unique systems to understand biological adaptation, the genomic basis of chemosensation across cave-dwelling species remains unexplored from a macroevolutionary perspective. Here, we explore the evolution of chemoreception in three beetle tribes that underwent at least six independent transitions to the underground, through a phylogenomics spyglass. Our findings suggest that the chemosensory gene repertoire varies dramatically between species. Overall, no parallel changes in the net rate of evolution of chemosensory gene families were detected prior, during, or after the habitat shift among subterranean lineages. Contrarily, we found evidence of lineage-specific changes within surface and subterranean lineages. However, our results reveal key duplications and losses shared between some of the lineages transitioning to the underground, including the loss of sugar receptors and gene duplications of the highly conserved ionotropic receptors IR25a and IR8a, involved in thermal and humidity sensing among other olfactory roles in insects. These duplications were detected both in independent subterranean lineages and their surface relatives, suggesting parallel evolution of these genes across lineages giving rise to cave-dwelling species. Overall, our results shed light on the genomic basis of chemoreception in subterranean beetles and contribute to our understanding of the genomic underpinnings of adaptation to the subterranean lifestyle at a macroevolutionary scale.

evolutionary biology↗