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Biology subjects

Pitchford, J.

Publications and source records attributed to Pitchford, J..

5 recordsLinked to original sources

Short and long-term consequences of Habitat Transformation for Biodiversity

Humans have dramatically altered the Earths surface and the distributions of species, but coherent patterns distinguishing cause from effect are hard to discern. Community composition and ecosystem function can change as rapidly as local land-use, and we lack robust principles to understand the outcomes of these changes. This hampers assessments of ecosystem collapse or robustness. Here we create theoretical ecosystems using a community assembly framework in which we manipulate environmental filtering via both the local land-use and species traits. This isolates the impacts of environmental filtering into land-use, land-use change, and species trait diversity, allowing us to extract clear patterns and relationships. First, we identify the paradox of maladaptation. We find that better land-use adaptation reduces species richness in the habitat but increases species abundance and ecosystem complexity. Increasing diversity amongst species traits reduces species richness via a similar mechanism. Additionally, whilst over long time scales there is very little effect of land-use change, on very short time scales there is a predominantly negative effect on richness. Together, this highlights the need for careful facilitation and management of land-use change in the face of an ever-changing world. Author SummaryHumans have dramatically altered the Earths surface, primarily through land-use change and changing where species are and where they can go. This has resulted in extinctions, immigration, and, most of all, variation in where species end up. Here, we use simulations to compare how habitat, habitat change, and species adaptations create variation in outcomes due to land-use change. First, we show that while adaptation is good for individual species, it also reduces the overall diversity (number of species) of the ecosystem; similarly, well-adapted species out-perform and exclude less well-adapted species, also lowering the resulting diversity of the ecosystem. Secondly, we find that habitat change has different short- and long-term consequences. Habitat change can create dramatic declines on short time scales due to the different pressures experienced by species based on which species they eat (trophic level). But, on long time scales it has very little effect on diversity, as communities acquire new species adapted to the new conditions. We conclude that short-term declines in diversity due to recent or ongoing habitat change could be eased by helping well-adapted species to immigrate to form ecological communities in the new environment.

ecology↗

Bi-directional highways and super-seeder tissues underpin parasite dissemination in experimental visceral leishmaniasis.

Visceral leishmaniasis (VL) is a life-threatening parasitic disease caused by Leishmania donovani and L. infantum. Although VL is characterised by organ-specific immunopathology and parasitism of the spleen, liver and bone marrow, other tissues may harbour parasites without overt pathology. The mechanisms governing patterns of within-host dissemination and tissue tropism are largely unknown. We used a barcoded library of isogenic L. donovani and an ecological analysis framework to evaluate parasite population diversity across tissues and to map parasite dissemination in a murine infection model. We reveal an unexpected high degree of inter-connectivity between parasite populations demonstrating: i) continual bi-directional dissemination between viscera and skin; ii) the existence of "super-seeder" sites that act as hubs fuelling systemic spread; and iii) rerouting of dissemination "highways" following immune perturbation. These findings change our understanding of L. donovani pathogenesis, providing critical insights into infection dynamics with direct implications for relapse, treatment failure and transmission.

microbiology↗

On the imbalance between production and exploitation of marine fish assemblages: a case study from the Celtic Seas

Sustainable management of marine ecosystems has to take into account the conservation of many species that are not themselves targets of fishing, in addition to those that are commercially exploited. Dynamic size-spectrum models suggest that fishing which leads species to have similar ratios of yield to production (i.e. similar exploitation ratios) is not sufficient to protect those that are rare: these species need to experience lower exploitation ratios. Here, the status of the demersal fish assemblage in the Celtic Seas is examined from the perspective of yield and production, using survey data collected over the period 2012 to 2016, and incorporating both common and rare species. The results give no evidence that rarer species have lower exploitation ratios than common ones. This suggests that current management methods are not not operating in a way that conserves the fish assemblage as a whole.

ecology↗

Multiple metals influence distinct properties of the Arabidopsis circadian clock

Circadian rhythms coordinate endogenous events with external signals, and are essential to biological function. When environmental contaminants affect these rhythms, the organism may experience fitness consequences such as reduced growth or increased susceptibility to pathogens. In their natural environment plants may be exposed to a wide range of industrial and agricultural pollutants. Here, we investigate how the addition of various metal salts to the environment can impact plant-circadian rhythms, via the promoter:luciferase system. The consequences of these environmental changes were found to be varied and complex. Therefore, in addition to Fourier-based analyses, we apply novel wavelet-based spectral hypothesis testing and clustering methodologies to organize and understand the data. We are able to classify broad sets of responses to environmental contaminants, including pollutants which increase, or decrease, the period, or which induce a lack of precision or disrupt any meaningful periodicity. The methods are general, and may be applied to discover common responses and hidden structures within a wide range of biological time series data.

plant biology↗

Variable bites and dynamic populations; new insights in Leishmania transmission

Leishmaniasis is a neglected tropical disease which kills an estimated 50000 people each year, with its deadly impact confined mainly to lower to middle income countries. Leishmania parasites are transmitted to human hosts by sand fly vectors during blood feeding. Recent experimental work shows that transmission is modulated by the patchy landscape of infection in the hosts skin, and the parasite population dynamics within the vector. Here we assimilate these new findings into a simple probabilistic model for disease transmission which replicates recent experimental results, and assesses their relative importance. The results of subsequent simulations, describing random parasite uptake and dynamics across multiple blood meals, show that skin heterogeneity is important for transmission by short-lived flies, but that for longer-lived flies with multiple bites the population dynamics within the vector dominate transmission probability. Our results indicate that efforts to reduce fly lifespan beneath a threshold of around two weeks may be especially helpful in reducing disease transmission.

systems biology↗