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Pidnebesna, A.

Publications and source records attributed to Pidnebesna, A..

2 recordsLinked to original sources

Typicality of Functional Connectivity robustly captures motion artifacts in rs-fMRI across datasets, atlases and preprocessing pipelines

Functional connectivity analysis of resting state fMRI data has recently become one of the most common approaches to characterizing individual brain function. It has been widely suggested that the functional connectivity matrix, calculated by correlating signals from regions of interest, is a useful approximate representation of the brains connectivity, potentially providing behaviorally or clinically relevant markers. However, functional connectivity estimates are known to be detrimentally affected by various artifacts, including those due to in-scanner head motion. Treatment of such artifacts poses a standing challenge because of their high variability. Moreover, as individual functional connections generally covary only very weakly with head motion estimates, motion influence is difficult to quantify robustly, and prone to be neglected in practice. Although the use of individual estimates of head motion, or group-level correlation of motion and functional connectivity has been suggested, a sufficiently sensitive measure of individual functional connectivity quality has not yet been established. We propose a new intuitive summary index, the Typicality of Functional Connectivity, to capture deviations from normal brain functional connectivity pattern. Based on results of resting state fMRI for 245 healthy subjects we show that this measure is significantly correlated with individual head motion metrics. The results were further robustly reproduced across atlas granularity and preprocessing options, as well as other datasets including 1081 subjects from the Human Connectome Project. The Typicality of Functional Connectivity provides individual proxy measure of motion effect on functional connectivity and is more sensitive to inter-individual variation of motion than individual functional connections. In principle it should be sensitive also to other types of artifacts, processing errors and possibly also brain pathology, allowing wide use in data quality screening and quantification in functional connectivity studies as well as methodological investigations.

neuroscience

Estimating Sparse Neuronal Signal from Hemodynamic Response: the Mixture Components Inference Approach

The approximate knowledge of the hemodynamic response to neuronal activity is widely used in statistical testing of effects of external stimulation, but has also been applied to estimate the neuronal activity directly from functional magnetic resonance data without knowing the stimulus timing. To this end, sparse linear regression methods have been previously used, including the well-known LASSO and the Dantzig selector. These methods generate a parametric family of solutions with different sparsity, among which a choice is finally based using some information criteria. As an alternative we propose a novel approach that instead utilizes the whole family of sparse regression solutions. Their ensemble provides a first approximation of probability of activation at each timepoint, and together with the conditional neuronal activity distributions estimated with the theory of mixtures with varying concentrations, they serve as the inputs to a Bayes classifier ultimately deciding between the true and false activations. As we show in extensive numerical simulations, the new method performs favourably in comparison with standard approaches in a range of realistic scenarios. This is mainly due to the avoidance of overfitting and underfitting that commonly plague the solutions based on sparse regression combined with model selection methods, including the corrected Akaike Information Criterion. This advantage is finally documented on fMRI task dataset.

neuroscience