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Phillip, J.

Publications and source records attributed to Phillip, J..

2 recordsLinked to original sources

NLTD 2.0: A Nonlinear Framework for Robust and Customizable Color Deconvolution in Histopathology

Advancements in computational approaches have enabled robust utilization of histological tissue data. A crucial step in the development of computational tools for the objective and quantitative analysis of tissue sections has been color deconvolution. Color deconvolution functions by separating the absorption of colors corresponding to stained molecular or tissue compartments. The most widely used color deconvolution method in digital pathology, linear color deconvolution as described in Ruifrok 2001 et al., decomposes color images according to the absorbance values for individual stains. However, linear color deconvolution assumes that stains are linearly decomposable, and it relies heavily upon identifying optimal color vectors of stains, which is often challenging. Furthermore, linear deconvolution methods cannot deconvolve the image with more than three stains, further limiting their broader applicability. To combat the limitations of previous methods, we developed an intuitive and robust color deconvolution method that effectively and accurately separates more than three stain signals, does not rely on predetermined color vectors, and doesnt rely on identifying optimal stain vectors. The proposed method, NLTD 2.0, presents a robust and efficient solution to tackle color variations in histopathology images, enhancing the reliability and precision of computational pathology. Additionally, incorporating the method as an ImageJ plugin amplifies accessibility and usability, enabling researchers and pathologists to leverage its capabilities without specialized programming skills. The intuitive interface streamlines the application, fostering broader acceptance within the computational pathology community.

bioinformatics↗

Gaze audits food items for bite points during human withdraw-to-eat movements

Food handling and eating are central to the skill of primate hand movements, and their analysis can provide insights into the evolutionary origins of hand use and its generalization to other behaviors, such as tool use. Vision contributes differently to the reach, grasp, and withdraw-to-eat components of hand use when eating, suggesting that these component movements are controlled by different visuomotor networks with distinct evolutionary histories. This study examines the role of gaze in mediating the withdraw-to-eat movement in human participants eating various food items, including candy, donuts, carrots, bananas, and apples, or pantomiming the eating movements for some of these items. Eye-tracking and frame-by-frame video analyses are used to describe gaze, gaze duration, gaze disengagement, eye blinking, and hand preference in eating each food item. The results show that gaze first identifies points on a food item that the dominant hand can grasp and then identifies points on the food item that the mouth can bite. The hand and finger shaping movements of both the initial grasp and subsequent food handling aid in exposing targets on the food for grasping and biting. The comparison of real and pantomime eating suggests that only real food items possess the affordances that elicit gaze patterns associated with identifying online targets for grasps and bites. The findings are discussed in relation to idea that gaze has a feature-detector-like role linking food cues to the skilled movements of hand shaping to grasp a food item and then to orient a food item to the mouth for biting.

animal behavior and cognition↗