Search bioRxiv⌕ Search

Biology subjects

Peruzzi, M.

Publications and source records attributed to Peruzzi, M..

3 recordsLinked to original sources

Individual-tree phenology reveals climate-dependent responses to urban thermal heterogeneity across U.S. cities

Rapid urbanization is altering the seasonal life cycles, or phenology, of urban trees. Diverse species composition and heterogeneous urban thermal environments can generate pronounced phenological variation within cities, yet such fine-scale seasonality remains poorly understood. This limits the ability to anticipate localized ecosystem services and disservices, including canopy cooling and pollen exposure. Here, we analyzed individual-tree phenology and their response to temperature across 76 cities in the contiguous United States by integrating municipal street-tree inventories, PlanetScope satellite time series, and 1-km near-surface urban air-temperature data. We quantified intra-city and cross-city phenological variation, estimated species-level associations between phenology and fine-scale urban temperature, and tested whether these associations vary with regional climatic context. Intra-city phenological variation rivaled cross-city variation for 33.3% of species in spring and 53.7% in fall. Temperature-phenology associations were widespread: warmer local urban environments were associated with earlier spring onset in 51.5% of cases and delayed fall senescence in 66.5%, with approximately two-thirds of these responses cascading to longer growing seasons. These associations varied with regional climate, generally showing stronger spring advancement and fall delay in cooler and wetter cities, but weaker or reversed responses in hotter or drier cities. Together, these results suggest that urban tree phenology is shaped by interactions among fine-scale urban temperature, species identity, and regional climate. Accounting for this heterogeneity can improve predictions of urban forest function and inform climate-resilient species selection and management. Plain Language SummaryStreet trees within the same city do not all leaf out in spring or lose their leaves in fall at the same time. This seasonal timing, called phenology, affects services such as shade and cooling, as well as disservices such as pollen exposure. We studied individual tree phenology and their temperature response in 76 U.S. cities using street-tree records, satellite observations, and local air-temperature data. We asked how much phenology varies within cities, how it responds to neighborhood-scale temperature differences, and whether these responses depend on regional climate. Variation within a city was often as large as variation among cities, especially in fall. Trees in warmer parts of cities generally leafed out earlier and lost their leaves later, often extending the growing season. However, these responses were stronger in cooler and wetter cities and weaker or sometimes reversed in hotter or drier cities. These findings show that urban tree seasonality depends on local temperature, species identity, and regional climate, which should be considered when selecting and managing trees for future cities. Key PointsO_LISubstantial within-city phenological variation is not captured by city-level averages. C_LIO_LIFine-scale temperature shaped phenology and growing-season length, but responses varied across species, cities, and phases. C_LIO_LITemperature sensitivity depended on regional climate, weakening or reversing in hotter or drier cities. C_LI

ecology↗

SHADE: A Multilevel Bayesian Approach to Modeling Directional Spatial Associations in Tissues

MotivationSpatial dependencies in tissue microenvironments, particularly asymmetric interactions between cell types, are central to understanding immune dynamics, tumor behavior, and tissue organization. Existing spatial statistical methods often assume symmetric associations or analyze images independently, limiting biological interpretability and inference quality. ResultsWe introduce SHADE (Spatial Hierarchical Asymmetry via Directional Estimation), a Bayesian hierarchical framework that models asymmetric spatial associations and multilevel structure in multiplexed imaging data. SHADE captures directional relationships via smooth spatial interaction curves (SICs), provides interpretable distance-resolved summaries of cell-cell interactions, and supports multiscale inference across tissue sections, patients, and cohorts. Simulation studies demonstrate improved inference quality and robustness, and application to colorectal cancer imaging data reveals biologically meaningful differences in immune and stromal organization. Availability and ImplementationSource code and analysis scripts are freely available at http://github.com/jeliason/SHADE and http://github.com/jeliason/shade_paper_code, implemented in R and Stan.

bioinformatics↗

Investigating the risk of cardiac fibrosis due to heat-not-burn cigarettes through human cardiac stromal cells

BackgroundThe use of alternative smoking devices, such as heat-not-burn cigarettes (HNBC), is increasing on a global scale, and their impact on health is still uncertain. ObjectiveTo investigate the effects of circulating molecules in HNBC chronic smokers on the fibrotic specification and paracrine function of cardiac stromal cells (CSCs). MethodsResident CSCs were isolated from the atrial tissue of patients with cardiovascular diseases, and exposed to the serum of 60 young healthy subjects, stratified in exclusive HNBC smokers, traditional combustion cigarette (TCC) smokers, or non-smokers (NS) as reference. ResultsCSCs treated with TCC serum displayed impaired 3D growth and migration, as well as increased expression and/or release of pro-inflammatory and pro-fibrotic cytokines. Cells cultured with HNBC serum showed increased mRNA levels of pro-fibrotic genes, and reduced expression of the gap junction protein CX43. Nonetheless, both TCC and HNBC sera reduced the release of angiogenic and protective factors from CSCs. In fact, their paracrine support to tube-formation by endothelial cells and to preserved cell viability of cardiomyocytes in culture was significantly impaired. Treatment with the sera of both types of smokers also increased the expression of NOX isoforms and the release of H2O2 by CSCs. ConclusionThe circulating molecules in the serum of chronic HNBC smokers induce fibrotic specification in CSCs. They also reduce the beneficial paracrine effects of stromal cells on endothelial cells and cardiomyocytes, albeit to a reduced extent for some features. These results point to a potential risk for atrial fibrosis development triggered by chronic HNBC use. CONDENSED ABSTRACTThe use of alternative smoking devices, such as heat-not-burn cigarettes (HNBC), is increasing on a global scale, and their impact on health is still uncertain. We isolated human stromal cells from the atrial tissue of patients with cardiovascular diseases, and exposed them to the serum of young healthy subjects, that are exclusive HNBC smokers. Results showed significant alterations in the phenotype of CSCs exposed to HNBC serum, suggesting a specification towards fibrosis, reduced support to parenchymal cells, and increased oxidative stress production. Data point to a potential risk for atrial fibrosis development triggered by chronic HNBC use.

pathology↗