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Biology subjects

Pereyra, J. P. A.

Publications and source records attributed to Pereyra, J. P. A..

3 recordsLinked to original sources

Contact- and diffusion-based allelopathic interaction of a seaweed with coral holobionts

Shifts from coral-dominated to macroalgal-dominated reef systems have become increasingly common in many coastal regions worldwide. Coral-macroalgal interactions have been shown to be generally detrimental to coral health, with macroalgal allelopathic compounds able to exert serious and even lethal effects on coral at various stages of growth and development. Previous studies have shown that the coral-associated microbial communities play important roles in coral health and mitigating external environmental stress, including macroalgal contact stress. However, it remains unclear whether changes in the coral microbiome have an influence on the Symbiodiniaceae community composition, and if such changes subsequently affect coral health. In this study, we examined changes in both the coral microbiome and the Symbiodiniaceae communities of two Singaporean coral species (Pocillopora acuta and Merulina ampliata) when exposed to both direct and water-mediated macroalgal contact with Lobophora sp. This was investigated using 16S rRNA gene amplicon sequencing to characterize the coral microbiome, and ITS2 variable region sequencing to profile the Symbiodiniaceae communities. Although no significant differences were observed for the coral microbiomes and Symbiodiniaceae communities at both alpha-and beta- diversity levels between control and macroalgal contact treated fragments within each coral species, inter-colony variations in responses to macroalgal contact were observed for both the coral microbiome and Symbiodiniaceae communities of M. ampliata. These results suggest that coral colonies vary in the mechanisms that allow mitigation of the effects of macroalgal contact, and in their resilience to macroalgal-induced stress.

ecology↗

A beneficial megaplasmid transforms an opportunistic bacterial pathogen to benefit coral by extending their thermal range

Resilient turbid coral reefs, found 1{degrees} north of the equator, experience fewer and less intense bleaching events despite being situated within the worlds busiest shipping port in highly urbanised Singapore. We hypothesised that bacteria within the coral holobiont play a role in maintaining coral diversity within this extreme environment by conferring traits that enhance host tolerance. Eleven Pseudovibrio isolates, whose genomes differ by only four SNPs, were isolated from the scleractinian coral Pachyseris speciosa. A [~]490 kbp megaplasmid (pCJH) was found in 7 of the 11 Pseudovibrio isolates. This study identified an opportunistic Pseudovibrio sp. pathogen of P. speciosa, accelerating bleaching disease. However, presence of the megaplasmid alters the ecological strategy of Pseudovibrio sp. toward mutualism, delaying coral bleaching. The megaplasmid enhances Pseudovibrios host colonisation and establishment of symbiosis through increased attachment and extends its bioactive genetic potential, but reduces fecundity. The Pseudovibrio genomes and megaplasmid encode several diffusible antibiotic biosynthetic gene clusters and contact-dependent inhibition mechanisms, with both types of inhibitory activity shown against local (i.e. P. speciosa) and type-strain Vibrio spp. Interaction analyses in experimentally heat-stressed corals revealed negative associations between Pseudovibrio and Vibrio ASVs corresponding to these cultured isolates. They also showed increased coral thermal tolerance by a full degree (1{degrees}C) when it is associated with the megaplasmid-bearing strain. Together, these findings support the Coral Probiotic Hypothesis that bacteria enhance coral resilience through chemical defense and identifies additional aspects to this symbiosis by a mobile genetic element which could play an important role in coral reef resilience.

microbiology↗

Comparative genomics of Dolichospermum circinale strains with differential paralytic shellfish toxin profiles

The cyanobacterium Dolichospermum circinale is a known producer of the neurotoxin saxitoxin and its analogues, collectively known as the paralytic shellfish toxins (PSTs). PSTs vary in potency, and the reported toxin profiles of D. circinale blooms vary in the quantities of individual PSTs, with the regulation of these profiles being poorly understood. In this study, we present the genomes of four D. circinale strains (ACBU01, ACMB03, ACMB13 and FSS-124) with unique PST profiles and perform genome-wide comparisons and specific analysis of the PST-producing biosynthetic gene cluster (sxt) to understand the variability in PST quotas. A reassessment of the previously published D. circinale AWQC131C genome was also performed to collate genomic variation between all strains. Analysis at the nucleotide and amino acid sequence level revealed that toxic strains maintain high genome-wide similarities, corroborated by the analysis of the pan- and variable genomes of each strain. Specifically, the sxt gene sequences were 99-100% identical across all strains. Novel tailoring (sxtSUL, sxtDIOX) and transport (sxtM4) genes were identified within the sxt cluster that were not reported previously in D. circinale. Taken together, these results indicate that the genetic machinery involved in PST production is conserved in this species, suggesting that the regulation of PST biosynthesis in D. circinale does not occur at the genomic level.

microbiology↗