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Patton, A.

Publications and source records attributed to Patton, A..

4 recordsLinked to original sources

Synchronization properties in C. elegans: Relating behavioral circuits to structural and functional neuronal connectivity

A central question in neuroscience is how neural processing generates or encodes behavior. Caenorhabditis elegans is well suited to addressing this question, given its compact nervous system and near-complete structural connectome. Despite this, findings from previous studies remain inconclusive. While some have shown that the connectome can robustly encode specific behaviors such as locomotion, others report that functional connectivity can be reconfigured across behaviors. We aim to understand the relationship between structural connectivity, functional connectivity and biological behavior in silico by using an experimentally motivated computational model leveraging the structural connectome. Stimulation of specific neurons in the model induces oscillatory neural responses, enabling us to infer neuronal functional connectivity. Functional connectivity is found to be stronger among some neurons, allowing us to identify functional communities. We find that electrical synapses play a critical role in determining functional communities, and the resulting mesoscale functional architecture is predominantly gap junctionally assortative. Furthermore, comparison with behavioral circuits shows that locomotion circuits are largely segregated into distinct functional communities while other circuits are more distributed across multiple functional communities. We also observe that stimulation of neurons belonging to these distributed circuits elicits a more synchronized neuronal response compared to stimulation of neurons within the more segregated circuits. This is consistent with the presence of behavioral patterns that originate in one circuit and terminate in another (e.g., chemosensation leading to locomotion), such that stimulation of one circuit can activate the other and eventually result in a synchronized response. We also find a large repertoire of chimera-like synchronization patterns upon stimulation of certain behavioral circuits (chemosensation, mechanosensation) indicating high dynamical flexibility. Overall, our results demonstrate that while certain behaviors are governed by functionally segregated circuits, others emerge from the synchronization of multiple functional communities, which are, to begin with, influenced by the underlying structural connectivity. Author summaryAnimals constantly transform sensory inputs into actions, but it is still unclear how this mapping from neural activity to behavior is implemented in a real nervous system. Caenorhabditis elegans offers a unique testbed for this question because its entire wiring diagram is nearly completely mapped. Yet, previous works have reached mixed conclusions about how well this anatomical circuit diagram predicts actual patterns of activity and behavior. Here, we use a biologically inspired computational model of the C. elegans nervous system to bridge this gap between structure, function, and behavior. By virtually stimulating individual neurons and observing the resulting network-wide oscillations, we infer how strongly different pairs and groups of neurons interact in functional terms. We then use network analysis tools to identify groups of neurons that tend to co-activate, and relate these functional communities to known behavioral circuits for locomotion and sensory processing. We find that gap junctions play a key role in shaping functional communities, and that locomotion-related neurons are more functionally segregated than neurons involved in other behaviors, which are more functionally distributed. Our results suggest that some behaviors rely on specialized, functionally isolated circuits, whereas others emerge from the coordinated activity of multiple functional communities.

neuroscience↗

Changing cognitive chimera states in human brain networks with age: Variations in cognitive integration and segregation

The aging process profoundly impacts the human brain, leading to notable changes in cognitive abilities. Although the brains structural and functional alterations with age are individually well documented, how differences in cognitive abilities emerge from variations in the underlying spatio-temporal patterns of regional brain activity is largely unknown. Patterns of increased synchronization between brain regions are taken as enhanced cognitive integration, while decreased synchronization is indicative of cognitive segregation. The ability to dynamically switch between different levels of integration and segregation across different cognitive systems is believed to be crucial for overall cognitive performance. Building on a recently proposed cognitively informed, synchronization-based framework, we study here age-related variations in dynamical flexibility between segregation and integration, as captured by changes in the variable patterns of partial synchronization or chimera states. Leveraging personalized brain network models based on large-scale, multisite datasets of cross-sectional healthy cohorts, we systematically show how regional brain stimulation produces distinct patterns of synchronization. We find that chimera states play a crucial role in regulating the balance between cognitive integration and segregation as the brain ages, providing new insights into the mechanisms underlying cognitive decline and preservation in aging. Whereas the emergent synchronization behavior of brain regions belonging to the same cognitive system often show the same aging trends, different cognitive systems can demonstrate distinct trends. This supports the idea that aging affects cognitive systems differently and that understanding this variability is essential for a more comprehensive view of neuro-cognitive aging. At the same time, dynamical flexibility increases in the oldest age groups across most cognitive systems. This may reflect compensatory mechanisms to counteract age-related cognitive declines and points towards a phenomenon of dedifferentiation. Yet, the multiplicity of behaviors highlights that whereas dedifferentiation emerges in certain cognitive systems, differentiation can also occur in others. This illustrates that these processes, though seemingly oppositional, can coexist and unfold in parallel across different cognitive systems. Author summaryThe healthy brain relies on a dynamic balance between two complementary processes--integration and segregation. Integration enables coordination between distributed brain regions, while segregation reflects specialization. Optimal cognitive function emerges from a highly flexible balance between these processes as implicated by greater cognitive performance. As we age, changes in cognitive abilities occur, especially at older age, while at the same time the brain reorganizes. The exact relationship between the two is largely unknown and our work aims to tackle this challenge. Using a data-informed computational model we examine age-related differences in dynamical flexibility between segregation and integration, as captured by changes in the variable patterns of partial synchronization called chimera states--patterns where some brain regions cooperate while others remain largely independent. Our research shows that chimera states are key to maintaining the brains balance between integration and segregation as we age. This balance shifts differently in brain systems responsible for distinct cognitive skills, which may provide new insights into the mechanisms underlying cognitive decline and preservation in aging. In particular, it supports the idea that aging affects brain systems differently and that understanding this variability is essential for a more comprehensive view of neuro-cognitive aging.

neuroscience↗

Historical and contemporary signatures of selection in response to transmissible cancer in the Tasmanian Devil (Sarcophilus harrisii)

Tasmanian devils (Sarcophilus harrisii) are evolving in response to a unique transmissible cancer, devil facial tumour disease (DFTD), first described in 1996. Persistence of wild populations and the recent emergence of a second independently evolved transmissible cancer suggest that transmissible cancers may be a recurrent feature in devils. Here we compared signatures of selection across temporal scales to determine whether genes or gene pathways under contemporary selection (6-8 generations) have also been subject to historical selection (65-85 million years), and test for recurrent selection in devils. First, we used a targeted sequencing approach, RAD-capture, to identify genomic regions subject to rapid evolution in approximately 2,500 devils in six populations as DFTD spread across the species range. We documented genome-wide contemporary evolution, including 186 candidate genes related to cell cycling and immune response. Then we used a molecular evolution approach to identify historical positive selection in devils compared to other marsupials and found evidence of selection in 1,773 genes. However, we found limited overlap across time scales, with historical selection detected in only 16 contemporary candidate genes, and no overlap in enriched functional gene sets. Our results are consistent with a novel, multi-locus evolutionary response of devils to DFTD. Our results can inform management actions to conserve adaptive potential of devils by identifying high priority targets for genetic monitoring and maintenance of functional diversity in managed populations.

evolutionary biology↗

Hybridizing salamanders experience accelerated diversification

Whether hybridization generates or erodes species diversity has long been debated, but to date most studies have been conducted at small taxonomic scales. Salamanders (order Caudata) represent a taxonomic order in which hybridization plays a prevalent ecological and evolutionary role. We employed a recently developed model of trait-dependent diversification to test the hypothesis that hybridization impacts the diversification dynamics of species that are currently hybridizing. We find strong evidence supporting this hypothesis, showing that hybridizing salamander lineages have significantly greater net-diversification rates than non-hybridizing lineages. This pattern is driven by concurrently increased speciation rates and decreased extinction rates in hybridizing lineages. Our results support the hypothesis that hybridization can act as a generative force in macroevolutionary diversification.

evolutionary biology↗