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Patri, I.

Publications and source records attributed to Patri, I..

2 recordsLinked to original sources

Modelling heterogeneities in the cross-linked bacterial sacculus

Examining the design principles of biological materials, in particular the presence of inhomogeneities in their ultrastructure is the key to understanding the often remarkable mechanical properties possessed by them. In this work, motivated by the question of understanding the effect of variability in the material properties of the peptide cross-linkers on the bulk mechanical properties of the cell wall structure of bacteria, we study a spring system in which variability is encoded by assigning values of spring constants and rupture strengths of the constituent springs from appropriate probability distribution. Using analytical methods and computer simulations, we study the response of the spring system to shear loading and observe how heterogeneities inherent in the system can heighten the resistance to failure. We derive the force extension relation of the system and explore the effect that the disorder in values of spring constant and rupture strength has on load carrying capacity of the system and failure displacement. We also study a discrete step shear loading of the system, exhibiting a transition from quasi-brittle to brittle response controlled by the step size, providing possible framework to experimentally quantify the disorder in analogous structures. The model studied here will also be useful in general to understand fiber bundles exhibiting disorder in the elasticity and rupture strengths of constituent fibers.

biophysics↗

The importance of being cross-linked for the bacterial cell wall

The bacterial cell wall is primarily composed of a mesh of stiff glycan strands cross-linked by peptide bridges and is essential for safeguarding the cell. The structure of the cell wall has to be stiff enough to bear the high turgor pressure and sufficiently tough to ensure protection against failure. Here we explore the role of various design features of the cell in enhancing the toughness of the cell wall. We explain how the glycan strand length distribution and the degree of cross-linking can play a vital role in ensuring that the cell wall offers sufficient resistance to propagation of cracks. We suggest a possible mechanism by which peptide bond hydrolysis can also help mitigate this risk of failure. We also study the reinforcing effect of MreB on the cell wall and conclude that the cross-linked structure of the cell wall plays the more important role in safeguarding against mechanical failure due to cracking.

biophysics↗